Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2303 ATGAATTTGGATTCACTTTTGCTTGACATGTCGATGAAATTGCACCATACCGATCTGAAGGGTGATTCAGGTACCCAGAAAAGGCTGAACGATCTTTCAGCTCAGTCTGCCAATAAGTACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTAACCTTTGGGGCATTCATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTTGGAGTGCACATATCTAAGGTTCTTTCAGTGAAGTTAGACGATTGGACAGATGAACAAGTTGATGCATTGATGAGTGCTGGTGGAAATACTGCCGTAAACGATAAATATGAAACTTTCATCCCAGATGGCAACAAAAAACCAGAGCCAGACTCCTCCATAGAGGAACGTTTTGATTTTATAAGAAAAAAGTATGAGCTGCTGCAATTCTCATGTCTTGATGACCAGTTTTTATGTCCTTTTCCACGCCCGCCAAAGAGAAATTCATCATTCTTGAATACCACTTCTGACGATGATGGGAATCAAGAAAAGAGTAATTACGAAAAACAACCAACAAAAAATCGAATTGGAAATGCATTCCGGAACAGTTGGGGAAGAAAAGATTCTGAACATAGAAATGGCAAGAAGGGAAATGCATTGGTATTAAGCACCTCAATGGTAGGCATGGTTGAATTCGTTGGTTTAGTTAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTATCAGGGATGTTGTGACGAGCGATCCGTATGTAATTCTCTCGTTGGGTAATCAATCAGTAAAGACGCGTGTTATAAAGAGCAGTTTGAATCCAGTATGGAATGAGAGCCTAATGTTGTCAATTCCGGATTTCGTTCCTCCATTAAGGGTGCTTGTGTATGACAAAGATACGTTTTCGACGGATGACTTCATGGGTGAAGCAGAAATTGATATCCATCCGCTGCTCAACGCAGCTCGAGCCTGTGAGAAGTCCACAGTTTGTGAACCAATGCAGCTGGGAAAATGGGTTGCAAGCAAGGATAACACTCTTGCAAAGGATGGAATCATTAGTGTTGTGGATGGGAAGATCCGGCAAGACATCTCCTTGAAGCTGCAGAATGTAGAGAGGGGTGAGCTCGAGATGGAGCTCGAATGTGTTCCTCTTTCTCAGTAG 1143 42.43 MNLDSLLLDMSMKLHHTDLKGDSGTQKRLNDLSAQSANKYCADCGSPDPKWVSLTFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSAGGNTAVNDKYETFIPDGNKKPEPDSSIEERFDFIRKKYELLQFSCLDDQFLCPFPRPPKRNSSFLNTTSDDDGNQEKSNYEKQPTKNRIGNAFRNSWGRKDSEHRNGKKGNALVLSTSMVGMVEFVGLVKVNVVRGTNLAIRDVVTSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFVPPLRVLVYDKDTFSTDDFMGEAEIDIHPLLNAARACEKSTVCEPMQLGKWVASKDNTLAKDGIISVVDGKIRQDISLKLQNVERGELEMELECVPLSQ 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38818033 38823562 + Sed0017198.1 Sed07g2303 721167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2303 380 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 221 318 IPR035892 -
Sed07g2303 380 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 17 380 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed07g2303 380 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 222 380 - -
Sed07g2303 380 SMART arf_gap_3 26 147 IPR001164 GO:0005096(InterPro)
Sed07g2303 380 ProSiteProfiles C2 domain profile. 206 322 IPR000008 -
Sed07g2303 380 Pfam C2 domain 225 314 IPR000008 -
Sed07g2303 380 Pfam Putative GTPase activating protein for Arf 27 139 IPR001164 GO:0005096(InterPro)
Sed07g2303 380 SMART C2_3c 225 320 IPR000008 -
Sed07g2303 380 Gene3D C2 domain 223 380 IPR035892 -
Sed07g2303 380 CDD ArfGap 29 135 - -
Sed07g2303 380 MobiDBLite consensus disorder prediction 158 206 - -
Sed07g2303 380 SUPERFAMILY ArfGap/RecO-like zinc finger 26 140 IPR037278 -
Sed07g2303 380 FunFam stromal membrane-associated protein 1 isoform X1 12 145 - -
Sed07g2303 380 CDD C2_ArfGAP 223 367 - -
Sed07g2303 380 Gene3D Arf GTPase activating protein 10 146 IPR038508 -
Sed07g2303 380 ProSiteProfiles ARF GTPase-activating proteins domain profile. 26 140 IPR001164 GO:0005096(InterPro)
Sed07g2303 380 PRINTS HIV Rev interacting protein signature 78 99 IPR001164 GO:0005096(InterPro)
Sed07g2303 380 PRINTS HIV Rev interacting protein signature 38 57 IPR001164 GO:0005096(InterPro)
Sed07g2303 380 PRINTS HIV Rev interacting protein signature 57 74 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0987 Sed-Chr3:6092991 Sed07g2303 Sed-Chr7:38818033 4.70E-133 dispersed
Sed03g0988 Sed-Chr3:6092991 Sed07g2303 Sed-Chr7:38818033 3.50E-129 dispersed
Sed04g2642 Sed-Chr4:38919551 Sed07g2303 Sed-Chr7:38818033 6.10E-133 dispersed
Sed07g2303 Sed-Chr7:38818033 Sed10g0063 Sed-Chr10:385591 2.70E-90 dispersed
Sed04g2641 Sed-Chr4:38919551 Sed07g2303 Sed-Chr7:38818033 6.90E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2303 K12486 - csv:101221541 657.907