Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2303 | ATGAATTTGGATTCACTTTTGCTTGACATGTCGATGAAATTGCACCATACCGATCTGAAGGGTGATTCAGGTACCCAGAAAAGGCTGAACGATCTTTCAGCTCAGTCTGCCAATAAGTACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTAACCTTTGGGGCATTCATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTTGGAGTGCACATATCTAAGGTTCTTTCAGTGAAGTTAGACGATTGGACAGATGAACAAGTTGATGCATTGATGAGTGCTGGTGGAAATACTGCCGTAAACGATAAATATGAAACTTTCATCCCAGATGGCAACAAAAAACCAGAGCCAGACTCCTCCATAGAGGAACGTTTTGATTTTATAAGAAAAAAGTATGAGCTGCTGCAATTCTCATGTCTTGATGACCAGTTTTTATGTCCTTTTCCACGCCCGCCAAAGAGAAATTCATCATTCTTGAATACCACTTCTGACGATGATGGGAATCAAGAAAAGAGTAATTACGAAAAACAACCAACAAAAAATCGAATTGGAAATGCATTCCGGAACAGTTGGGGAAGAAAAGATTCTGAACATAGAAATGGCAAGAAGGGAAATGCATTGGTATTAAGCACCTCAATGGTAGGCATGGTTGAATTCGTTGGTTTAGTTAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTATCAGGGATGTTGTGACGAGCGATCCGTATGTAATTCTCTCGTTGGGTAATCAATCAGTAAAGACGCGTGTTATAAAGAGCAGTTTGAATCCAGTATGGAATGAGAGCCTAATGTTGTCAATTCCGGATTTCGTTCCTCCATTAAGGGTGCTTGTGTATGACAAAGATACGTTTTCGACGGATGACTTCATGGGTGAAGCAGAAATTGATATCCATCCGCTGCTCAACGCAGCTCGAGCCTGTGAGAAGTCCACAGTTTGTGAACCAATGCAGCTGGGAAAATGGGTTGCAAGCAAGGATAACACTCTTGCAAAGGATGGAATCATTAGTGTTGTGGATGGGAAGATCCGGCAAGACATCTCCTTGAAGCTGCAGAATGTAGAGAGGGGTGAGCTCGAGATGGAGCTCGAATGTGTTCCTCTTTCTCAGTAG | 1143 | 42.43 | MNLDSLLLDMSMKLHHTDLKGDSGTQKRLNDLSAQSANKYCADCGSPDPKWVSLTFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSAGGNTAVNDKYETFIPDGNKKPEPDSSIEERFDFIRKKYELLQFSCLDDQFLCPFPRPPKRNSSFLNTTSDDDGNQEKSNYEKQPTKNRIGNAFRNSWGRKDSEHRNGKKGNALVLSTSMVGMVEFVGLVKVNVVRGTNLAIRDVVTSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFVPPLRVLVYDKDTFSTDDFMGEAEIDIHPLLNAARACEKSTVCEPMQLGKWVASKDNTLAKDGIISVVDGKIRQDISLKLQNVERGELEMELECVPLSQ | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 38818033 | 38823562 | + | Sed0017198.1 | Sed07g2303 | 721167 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2303 | 380 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 221 | 318 | IPR035892 | - | |
Sed07g2303 | 380 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 17 | 380 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Sed07g2303 | 380 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 222 | 380 | - | - | |
Sed07g2303 | 380 | SMART | arf_gap_3 | 26 | 147 | IPR001164 | GO:0005096(InterPro) | |
Sed07g2303 | 380 | ProSiteProfiles | C2 domain profile. | 206 | 322 | IPR000008 | - | |
Sed07g2303 | 380 | Pfam | C2 domain | 225 | 314 | IPR000008 | - | |
Sed07g2303 | 380 | Pfam | Putative GTPase activating protein for Arf | 27 | 139 | IPR001164 | GO:0005096(InterPro) | |
Sed07g2303 | 380 | SMART | C2_3c | 225 | 320 | IPR000008 | - | |
Sed07g2303 | 380 | Gene3D | C2 domain | 223 | 380 | IPR035892 | - | |
Sed07g2303 | 380 | CDD | ArfGap | 29 | 135 | - | - | |
Sed07g2303 | 380 | MobiDBLite | consensus disorder prediction | 158 | 206 | - | - | |
Sed07g2303 | 380 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 26 | 140 | IPR037278 | - | |
Sed07g2303 | 380 | FunFam | stromal membrane-associated protein 1 isoform X1 | 12 | 145 | - | - | |
Sed07g2303 | 380 | CDD | C2_ArfGAP | 223 | 367 | - | - | |
Sed07g2303 | 380 | Gene3D | Arf GTPase activating protein | 10 | 146 | IPR038508 | - | |
Sed07g2303 | 380 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 26 | 140 | IPR001164 | GO:0005096(InterPro) | |
Sed07g2303 | 380 | PRINTS | HIV Rev interacting protein signature | 78 | 99 | IPR001164 | GO:0005096(InterPro) | |
Sed07g2303 | 380 | PRINTS | HIV Rev interacting protein signature | 38 | 57 | IPR001164 | GO:0005096(InterPro) | |
Sed07g2303 | 380 | PRINTS | HIV Rev interacting protein signature | 57 | 74 | IPR001164 | GO:0005096(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0987 | Sed-Chr3:6092991 | Sed07g2303 | Sed-Chr7:38818033 | 4.70E-133 | dispersed | |
Sed03g0988 | Sed-Chr3:6092991 | Sed07g2303 | Sed-Chr7:38818033 | 3.50E-129 | dispersed | |
Sed04g2642 | Sed-Chr4:38919551 | Sed07g2303 | Sed-Chr7:38818033 | 6.10E-133 | dispersed | |
Sed07g2303 | Sed-Chr7:38818033 | Sed10g0063 | Sed-Chr10:385591 | 2.70E-90 | dispersed | |
Sed04g2641 | Sed-Chr4:38919551 | Sed07g2303 | Sed-Chr7:38818033 | 6.90E-184 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2303 | K12486 | - | csv:101221541 | 657.907 |