Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2306 ATGGCTCTTGTTTCTGGAGAGGCCCAATTTCACGTGTTGGCTGTTGACGACAGCCTTGTCGATCGCAAGCTGATTGAAAGGCTGCTCAAAACCTCCTCCTTCAATGTAACCGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTCGAGGGAGAAATGGAAGCACCGATTCTCCTGCTTCTCATGAAAATCATCACCAACATCAGGAAATTGAAGTGAATCTCATAATTACAGATTATTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGGATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCTTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGATTTTCTGCTGAAACCAGTGAAATTATCTGATGTCAACAAGCTCAAGCCTTACATATGTAGAGGAAAAGCCAAGGAAATGGAACAGATCCAATCATGTGAGAGAACAAGAACAAAATATAATGATCATTTCTAA 522 41.19 MALVSGEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRGRNGSTDSPASHENHHQHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSRINRCLEEGAEDFLLKPVKLSDVNKLKPYICRGKAKEMEQIQSCERTRTKYNDHF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38840372 38843023 - Sed0004244.1 Sed07g2306 721170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2306 173 ProSiteProfiles Response regulatory domain profile. 11 149 IPR001789 GO:0000160(InterPro)
Sed07g2306 173 Pfam Response regulator receiver domain 68 141 IPR001789 GO:0000160(InterPro)
Sed07g2306 173 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 158 IPR045279 GO:0009736(InterPro)
Sed07g2306 173 SUPERFAMILY CheY-like 10 144 IPR011006 -
Sed07g2306 173 CDD REC_typeA_ARR 12 144 - -
Sed07g2306 173 Gene3D - 11 170 - -
Sed07g2306 173 SMART REC_2 10 148 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1011 Sed-Chr3:6211263 Sed07g2306 Sed-Chr7:38840372 1.90E-50 dispersed
Sed07g2306 Sed-Chr7:38840372 Sed14g0017 Sed-Chr14:230191 2.00E-53 dispersed
Sed07g2306 Sed-Chr7:38840372 Sed14g0016 Sed-Chr14:229095 2.00E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39168 PF00072 Response_reg 8.50E-21 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2306 K14492 - csv:101207245 252.292