Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2306 | ATGGCTCTTGTTTCTGGAGAGGCCCAATTTCACGTGTTGGCTGTTGACGACAGCCTTGTCGATCGCAAGCTGATTGAAAGGCTGCTCAAAACCTCCTCCTTCAATGTAACCGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTCGAGGGAGAAATGGAAGCACCGATTCTCCTGCTTCTCATGAAAATCATCACCAACATCAGGAAATTGAAGTGAATCTCATAATTACAGATTATTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGGATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCTTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGATTTTCTGCTGAAACCAGTGAAATTATCTGATGTCAACAAGCTCAAGCCTTACATATGTAGAGGAAAAGCCAAGGAAATGGAACAGATCCAATCATGTGAGAGAACAAGAACAAAATATAATGATCATTTCTAA | 522 | 41.19 | MALVSGEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRGRNGSTDSPASHENHHQHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSRINRCLEEGAEDFLLKPVKLSDVNKLKPYICRGKAKEMEQIQSCERTRTKYNDHF | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 38840372 | 38843023 | - | Sed0004244.1 | Sed07g2306 | 721170 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2306 | 173 | ProSiteProfiles | Response regulatory domain profile. | 11 | 149 | IPR001789 | GO:0000160(InterPro) | |
Sed07g2306 | 173 | Pfam | Response regulator receiver domain | 68 | 141 | IPR001789 | GO:0000160(InterPro) | |
Sed07g2306 | 173 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 7 | 158 | IPR045279 | GO:0009736(InterPro) | |
Sed07g2306 | 173 | SUPERFAMILY | CheY-like | 10 | 144 | IPR011006 | - | |
Sed07g2306 | 173 | CDD | REC_typeA_ARR | 12 | 144 | - | - | |
Sed07g2306 | 173 | Gene3D | - | 11 | 170 | - | - | |
Sed07g2306 | 173 | SMART | REC_2 | 10 | 148 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1011 | Sed-Chr3:6211263 | Sed07g2306 | Sed-Chr7:38840372 | 1.90E-50 | dispersed | |
Sed07g2306 | Sed-Chr7:38840372 | Sed14g0017 | Sed-Chr14:230191 | 2.00E-53 | dispersed | |
Sed07g2306 | Sed-Chr7:38840372 | Sed14g0016 | Sed-Chr14:229095 | 2.00E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39168 | PF00072 | Response_reg | 8.50E-21 | CL0304 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2306 | K14492 | - | csv:101207245 | 252.292 |