Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2325 | ATGGAAAACGTAGAGGACATGAAGCCATCAACTACAAATAATTTCCATTCCCAAGGCAGGACAGACACTGTTGAAGCTCAATTCTCAGAAACCTGTCAGAATGGATTACATCTGGACGAGAGTTGTTGTCATCAAGCGTTGAAATTGTTTAGAGAAACCAGGCATCTTATGGTGGCCAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAGCGATTTTGGTCTGCCTTTGTTTTATATTCTGTGAAGAGGCTAAGAGATAAGAAGGCAGAGAGTTCGCCTCAGAGACCTGAGAACAATAGCTTTACATTATGCGACATATTGAGAATTTGCAAGCTGAATATTGTAGATTTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAAACTCTATGGTGCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCCAACTTCGTGCATTTGAGCCTATTAAGCAAGTACTATAAGCGTGTCTTCCAAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGATATATCTTGCCCTACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCATTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCCATTTTAATTCTTCATGTTCCACTTCGTGCAAGAAACTTCAACATTCTCGACTCTGAACGTTTTGTTAAGAAGGGTGGAAAAGGAGTGGACCTGCTTGGATCCCTGTGTAATGTCTATGACACCTCAGAGGAAGAACTCAAGGAAGTAATTGAGAAGGCAAATAATTTGATTGAAAACATTTTGAAGAAAAAGCCTCGTTTGGCTTCTGAGTGCAATAGTAAAAGCTTGGAGAATATAGACACCGATGGTTTGATATTCTTTGAAGACTTGATGGAGGAGTCATCTCTTTCATCGAGTTTAGAAATTCTAGAAAAGGATTACGAAGATGCAATTCGTAATAAAGGTGAGTTTGATGAACGGGTATTTGTTAATGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAATGAGTGGCATCAAGAGGAAGTTTGATTCAATATGCTCACCTGCAAGGACGATAACAAGTCCAATGTCTCCCCTTCGCTCTCCTGCTTCACATACCAACGACACTCTTAATAGGAGCAACACAAAACTTGCCACACCTGTTAGCATAGCTATGACGACGGCAAAATGGCTTAGAACTATTATTTCTCCACTTCCACCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCAATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAACTGTAAATTTACCGAGTGCAAACCTTATGGATAATATCTGGGCAGAACAACGACAACTAGAAGCACTAAAGTTATATTATAGAGTTTTAGAAGCAATGTGCAGAGCAGAGTCTCAGATGTTGCATGTGACTAATTTGACGTCTTTGCTGACTAATGAGAGGTTCCATAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACACATAAAACTGTTACAATGTTGTTTCCTGCAGTATTAGATAGAACTGGCATTACAGCTTTTGACCTTTGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCGCTTCCTAGAGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGACTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCCATGTATAACTCCTTGATTGTTGCAAAACCTGCCTTTGCTGCTGAAATAAATCGCCTTGATTTATTAGCTGAACCCATGCCCTCCTTAGATGCAATTGCTGTTCAAATTAACTTTTCTGGTGGGGTATCAACCATGCCTAACTTGCCAAAGCACGAGAGTTTTCCAGGTCAAAATGGGGATATAAGGTCACCAAAAAGAGTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGAAATTCCTTTACTTCTCCAGTGAAGGACCGTCTTCTGGCTTTCAGTAATATTAAGTCCAAGCTTTTGCCACCTCCTTTGCAATCGGCATTTGCAAGTCCTACTCGGCCTATACCTGGAGGTGGCGGGGAAACGTGTGCAGAAACTGGAATTAACATATTTTTTAGCAAGATCATCAAGTTGGCGGCTGTTAGAGTCAATGGCATGGTTGAAAAATTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACCGCCTTTTCCAACAAATACTCAGTCAAAAAGCATCACTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCATTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTGACAACTACAGGAAGCAACCACATGTCTTCCGCAATGTGTTTGTTGATTGGTCGTCCACACGTCATAATGGGAGATCAGGACAGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCTTCTGTTAAACCTTTGCTTGTTGAGATTGGCCCGGCGGGATCAACCACGAAAACTGACAGGGTTCCTCAACTCAACAACAGTATTGATGCACCTTGTCCTGGCTCACCCAAGATATCTTCTTTTCCAAGTCTTCCTGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTTTATGTCTCTCCATTAAGGTCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACCGCCATAAACAACCGCTTGAATGGAACAAGGAAACTTCGAGGCACATTAAATTTTGACGATGCGGACGTTGGTTTGGTCAGTGATTCTCTGGTGGCGAACAGCCTTTACCTATAA | 2991 | 40.96 | MENVEDMKPSTTNNFHSQGRTDTVEAQFSETCQNGLHLDESCCHQALKLFRETRHLMVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKKAESSPQRPENNSFTLCDILRICKLNIVDFFKELPQFVVKAGPVLSKLYGADWENRLEAKELQANFVHLSLLSKYYKRVFQEFFSTSDANVEKQSDISCPTGYLSDYHRFGWLLFLALRVHAFSHFKDLVTCTNGLVSILAILILHVPLRARNFNILDSERFVKKGGKGVDLLGSLCNVYDTSEEELKEVIEKANNLIENILKKKPRLASECNSKSLENIDTDGLIFFEDLMEESSLSSSLEILEKDYEDAIRNKGEFDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSICSPARTITSPMSPLRSPASHTNDTLNRSNTKLATPVSIAMTTAKWLRTIISPLPPKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCITVNLPSANLMDNIWAEQRQLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLDRTGITAFDLCKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPAFAAEINRLDLLAEPMPSLDAIAVQINFSGGVSTMPNLPKHESFPGQNGDIRSPKRVCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPIPGGGGETCAETGINIFFSKIIKLAAVRVNGMVEKLQLSHQIRENVYRLFQQILSQKASLLFNRHIDQIILCCFYGIAKISQLSLTFREIIDNYRKQPHVFRNVFVDWSSTRHNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTTKTDRVPQLNNSIDAPCPGSPKISSFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYL | 996 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 39125607 | 39134252 | - | Sed0009106.1 | Sed07g2325 | 721189 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2325 | 996 | FunFam | Retinoblastoma-related protein 1 | 691 | 897 | - | - | |
Sed07g2325 | 996 | Pfam | Retinoblastoma-associated protein A domain | 417 | 618 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Sed07g2325 | 996 | SUPERFAMILY | Cyclin-like | 739 | 903 | IPR036915 | - | |
Sed07g2325 | 996 | Gene3D | - | 420 | 608 | - | - | |
Sed07g2325 | 996 | Gene3D | - | 197 | 355 | - | - | |
Sed07g2325 | 996 | FunFam | Retinoblastoma-related protein 1 | 420 | 608 | - | - | |
Sed07g2325 | 996 | SMART | RB_A_2 | 417 | 618 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Sed07g2325 | 996 | Pfam | Retinoblastoma-associated protein B domain | 741 | 864 | IPR002719 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Sed07g2325 | 996 | Gene3D | - | 701 | 888 | - | - | |
Sed07g2325 | 996 | Pfam | Domain of unknown function (DUF3452) | 100 | 236 | IPR024599 | - | |
Sed07g2325 | 996 | FunFam | Retinoblastoma-related protein 1 | 197 | 355 | - | - | |
Sed07g2325 | 996 | PANTHER | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | 15 | 995 | IPR028309 | GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER) | |
Sed07g2325 | 996 | MobiDBLite | consensus disorder prediction | 391 | 410 | - | - | |
Sed07g2325 | 996 | Coils | Coil | 270 | 301 | - | - | |
Sed07g2325 | 996 | SMART | DUF3452_2 | 87 | 236 | IPR024599 | - | |
Sed07g2325 | 996 | SUPERFAMILY | Cyclin-like | 425 | 620 | IPR036915 | - | |
Sed07g2325 | 996 | Coils | Coil | 331 | 351 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2669 | Sed-Chr4:39089921 | Sed07g2325 | Sed-Chr7:39125607 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39176 | PF01858 | RB_A | 4.00E-63 | CL0065 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2325 | K04681 | - | csv:101219810 | 1734.54 |