Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2325 ATGGAAAACGTAGAGGACATGAAGCCATCAACTACAAATAATTTCCATTCCCAAGGCAGGACAGACACTGTTGAAGCTCAATTCTCAGAAACCTGTCAGAATGGATTACATCTGGACGAGAGTTGTTGTCATCAAGCGTTGAAATTGTTTAGAGAAACCAGGCATCTTATGGTGGCCAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAGCGATTTTGGTCTGCCTTTGTTTTATATTCTGTGAAGAGGCTAAGAGATAAGAAGGCAGAGAGTTCGCCTCAGAGACCTGAGAACAATAGCTTTACATTATGCGACATATTGAGAATTTGCAAGCTGAATATTGTAGATTTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAAACTCTATGGTGCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCCAACTTCGTGCATTTGAGCCTATTAAGCAAGTACTATAAGCGTGTCTTCCAAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGATATATCTTGCCCTACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCATTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCCATTTTAATTCTTCATGTTCCACTTCGTGCAAGAAACTTCAACATTCTCGACTCTGAACGTTTTGTTAAGAAGGGTGGAAAAGGAGTGGACCTGCTTGGATCCCTGTGTAATGTCTATGACACCTCAGAGGAAGAACTCAAGGAAGTAATTGAGAAGGCAAATAATTTGATTGAAAACATTTTGAAGAAAAAGCCTCGTTTGGCTTCTGAGTGCAATAGTAAAAGCTTGGAGAATATAGACACCGATGGTTTGATATTCTTTGAAGACTTGATGGAGGAGTCATCTCTTTCATCGAGTTTAGAAATTCTAGAAAAGGATTACGAAGATGCAATTCGTAATAAAGGTGAGTTTGATGAACGGGTATTTGTTAATGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAATGAGTGGCATCAAGAGGAAGTTTGATTCAATATGCTCACCTGCAAGGACGATAACAAGTCCAATGTCTCCCCTTCGCTCTCCTGCTTCACATACCAACGACACTCTTAATAGGAGCAACACAAAACTTGCCACACCTGTTAGCATAGCTATGACGACGGCAAAATGGCTTAGAACTATTATTTCTCCACTTCCACCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCAATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAACTGTAAATTTACCGAGTGCAAACCTTATGGATAATATCTGGGCAGAACAACGACAACTAGAAGCACTAAAGTTATATTATAGAGTTTTAGAAGCAATGTGCAGAGCAGAGTCTCAGATGTTGCATGTGACTAATTTGACGTCTTTGCTGACTAATGAGAGGTTCCATAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACACATAAAACTGTTACAATGTTGTTTCCTGCAGTATTAGATAGAACTGGCATTACAGCTTTTGACCTTTGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCGCTTCCTAGAGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGACTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCCATGTATAACTCCTTGATTGTTGCAAAACCTGCCTTTGCTGCTGAAATAAATCGCCTTGATTTATTAGCTGAACCCATGCCCTCCTTAGATGCAATTGCTGTTCAAATTAACTTTTCTGGTGGGGTATCAACCATGCCTAACTTGCCAAAGCACGAGAGTTTTCCAGGTCAAAATGGGGATATAAGGTCACCAAAAAGAGTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGAAATTCCTTTACTTCTCCAGTGAAGGACCGTCTTCTGGCTTTCAGTAATATTAAGTCCAAGCTTTTGCCACCTCCTTTGCAATCGGCATTTGCAAGTCCTACTCGGCCTATACCTGGAGGTGGCGGGGAAACGTGTGCAGAAACTGGAATTAACATATTTTTTAGCAAGATCATCAAGTTGGCGGCTGTTAGAGTCAATGGCATGGTTGAAAAATTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACCGCCTTTTCCAACAAATACTCAGTCAAAAAGCATCACTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCATTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTGACAACTACAGGAAGCAACCACATGTCTTCCGCAATGTGTTTGTTGATTGGTCGTCCACACGTCATAATGGGAGATCAGGACAGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCTTCTGTTAAACCTTTGCTTGTTGAGATTGGCCCGGCGGGATCAACCACGAAAACTGACAGGGTTCCTCAACTCAACAACAGTATTGATGCACCTTGTCCTGGCTCACCCAAGATATCTTCTTTTCCAAGTCTTCCTGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTTTATGTCTCTCCATTAAGGTCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACCGCCATAAACAACCGCTTGAATGGAACAAGGAAACTTCGAGGCACATTAAATTTTGACGATGCGGACGTTGGTTTGGTCAGTGATTCTCTGGTGGCGAACAGCCTTTACCTATAA 2991 40.96 MENVEDMKPSTTNNFHSQGRTDTVEAQFSETCQNGLHLDESCCHQALKLFRETRHLMVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKKAESSPQRPENNSFTLCDILRICKLNIVDFFKELPQFVVKAGPVLSKLYGADWENRLEAKELQANFVHLSLLSKYYKRVFQEFFSTSDANVEKQSDISCPTGYLSDYHRFGWLLFLALRVHAFSHFKDLVTCTNGLVSILAILILHVPLRARNFNILDSERFVKKGGKGVDLLGSLCNVYDTSEEELKEVIEKANNLIENILKKKPRLASECNSKSLENIDTDGLIFFEDLMEESSLSSSLEILEKDYEDAIRNKGEFDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSICSPARTITSPMSPLRSPASHTNDTLNRSNTKLATPVSIAMTTAKWLRTIISPLPPKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCITVNLPSANLMDNIWAEQRQLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLDRTGITAFDLCKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPAFAAEINRLDLLAEPMPSLDAIAVQINFSGGVSTMPNLPKHESFPGQNGDIRSPKRVCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPIPGGGGETCAETGINIFFSKIIKLAAVRVNGMVEKLQLSHQIRENVYRLFQQILSQKASLLFNRHIDQIILCCFYGIAKISQLSLTFREIIDNYRKQPHVFRNVFVDWSSTRHNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTTKTDRVPQLNNSIDAPCPGSPKISSFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYL 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39125607 39134252 - Sed0009106.1 Sed07g2325 721189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2325 996 FunFam Retinoblastoma-related protein 1 691 897 - -
Sed07g2325 996 Pfam Retinoblastoma-associated protein A domain 417 618 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Sed07g2325 996 SUPERFAMILY Cyclin-like 739 903 IPR036915 -
Sed07g2325 996 Gene3D - 420 608 - -
Sed07g2325 996 Gene3D - 197 355 - -
Sed07g2325 996 FunFam Retinoblastoma-related protein 1 420 608 - -
Sed07g2325 996 SMART RB_A_2 417 618 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Sed07g2325 996 Pfam Retinoblastoma-associated protein B domain 741 864 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Sed07g2325 996 Gene3D - 701 888 - -
Sed07g2325 996 Pfam Domain of unknown function (DUF3452) 100 236 IPR024599 -
Sed07g2325 996 FunFam Retinoblastoma-related protein 1 197 355 - -
Sed07g2325 996 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 15 995 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Sed07g2325 996 MobiDBLite consensus disorder prediction 391 410 - -
Sed07g2325 996 Coils Coil 270 301 - -
Sed07g2325 996 SMART DUF3452_2 87 236 IPR024599 -
Sed07g2325 996 SUPERFAMILY Cyclin-like 425 620 IPR036915 -
Sed07g2325 996 Coils Coil 331 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2669 Sed-Chr4:39089921 Sed07g2325 Sed-Chr7:39125607 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39176 PF01858 RB_A 4.00E-63 CL0065 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2325 K04681 - csv:101219810 1734.54