Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2342 ATGGGAAAACTAAGCTTAAACTTCTGCAATAGTTTTCTTGAGAATTCAAAACCCTACTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCCAAAGTCTCTCTTACTAGAGGGATGAGCCATTACGTCCTCGTCGTTTATCGACATGCCTTCGCTACTGCTTCCATCCTACCCTTTGTTCTCTTCTTCGAGCGGAGACAGCAGCCAAGGATAACATTCAAAGTTTTCACTCAAATATTTGTGTTGGCTTTGCTTGGACCCGTTATCGATCAAAATTTCTACTATGCTGGATTGAAATATACTTCACCAACTTTCTCTTGTGCAATGAGCAACATGCTGCCTGCAATGACATTTGTGATGGCTGTGATCTTCAGGATGGAAAAAGTGGACATGAAGAAAGTGAGAAGCCAAGCAAAAGTTTTGGGAACTTTAGTGACAGTTGGTGGAGCATTGCTGATGACTTTGTACAAAGGCCCACTTGTTGAAATGGCTTGGTCTAAACATTCTCATGTTCCCACAAAAGCCCCTCATGATTCTCCCAACAAAGATTGGTTTAAAGGCTCCATTTTTCTCATCATTGCCACTCTTGCTTGGGCTTCTCTTTTTGTCTTGCAGAATGAGGCGTTGAAGACATACGAGAAGCACCAGTTCACTCTCACTGCACTGGTGTGCTTTCTTGGGACTTTGCAAGCCATTGCTGTGACTTTAGTAGCTGAACACAAAGCTTCTGTTTGGAGAATTGGTTGGGATATGAACCTCCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGTTGGTGATGAAAAAGAGGGGGCCTGTATTTGCAACTGCATTTAGCCCTTTGATGATGATTATTGTGGCCATCATGGGCTCTTTCATCCTTGCTGAAAAGATCTTTCTTGGAGGAATAATAGGATCCATCTTGATAGTATTTGGGCTATATTCAGTTCTTTGGGGAAAGCACAAGGAGAATTTGGAGAGCATTGATGCTGCTAACAAAATACCAGAAGTTAATAAGCTTTCCAATAATTCACTTATTATTTCCATGCCTGACCCTGAAACCCCCATCAAACCCAACCAAATTTCAAGTGAATGA 1134 41.53 MGKLSLNFCNSFLENSKPYFAMISLQFGYAGMNIISKVSLTRGMSHYVLVVYRHAFATASILPFVLFFERRQQPRITFKVFTQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKVDMKKVRSQAKVLGTLVTVGGALLMTLYKGPLVEMAWSKHSHVPTKAPHDSPNKDWFKGSIFLIIATLAWASLFVLQNEALKTYEKHQFTLTALVCFLGTLQAIAVTLVAEHKASVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFATAFSPLMMIIVAIMGSFILAEKIFLGGIIGSILIVFGLYSVLWGKHKENLESIDAANKIPEVNKLSNNSLIISMPDPETPIKPNQISSE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39296968 39300777 + Sed0007453.1 Sed07g2342 721206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2342 377 PANTHER WAT1-RELATED PROTEIN 20 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed07g2342 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 335 - -
Sed07g2342 377 Pfam EamA-like transporter family 191 330 IPR000620 GO:0016020(InterPro)
Sed07g2342 377 Pfam EamA-like transporter family 19 159 IPR000620 GO:0016020(InterPro)
Sed07g2342 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g4020 Sed-Chr4:47865444 Sed07g2342 Sed-Chr7:39296968 1.50E-49 dispersed
Sed07g2342 Sed-Chr7:39296968 Sed14g0046 Sed-Chr14:593769 1.50E-122 dispersed
Sed11g1945 Sed-Chr11:33783997 Sed07g2342 Sed-Chr7:39296968 3.30E-43 dispersed
Sed04g2680 Sed-Chr4:39178975 Sed07g2342 Sed-Chr7:39296968 2.60E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2342 - - - 0.0