Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2345 ATGAAGAAGAAGCTCGATACCCGATTTCCTGCTGCTCGAATAAAAAAGATTATGCAAGCAGATGAGGATGTTGGAAAGATAGCATTGGCAGTACCTGTTTTAGTTTCTAAAGCATTGGAACTATTCTTGCAAGACCTCTGCGATCGTACATATGAGATAACCCTACAAAGAGGAGCAAAGACCATGAACTCATTGCACTTAAAGCACTGTGTTCAAAGCTATAGTGTCTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCAGTTGGCGACGAGGGCAATGAAATTGATGAGTTGAAGAAGAGCAGAACGCAGGACATAAGCCATGGCAGCACTGGTAGAGGAAGAGGACGGGGACGAGGAAGGGGTCGAGGACGGCCTGCTCGAAATGCGGATAGGGATCACCTCCAACCTAGCCTCGACGCCAACCCTAGCACATCTATAGAAAACAGGAACATGAACCTCAACCCAGATGTGCACATGGAGAACCACGTTGAGCCTAGCGAAACAGCAAAAGAAGTCGGCGAAGCTAATCAAGCTATCCAGAACTTTGATCTCAATGCAGATGTCAATGCCAGTGAAGACTCCAAGATTATGGCAGCACCAGCAGTACCAGTAGTGCCCATTGAACCAGCCAGGCAGCCCGGGCCAACTACTATGGAGTCCGGGCCTAAAGCTGCTGACGAGTTCCCTGCCTGGCCTCTATCTGACGTGGACAAAATGGCAATTGACCCTCTCCAATATTCCCATCTCAGCACAAGAATAGAAGAGGAAGATGAAGATTATGATGAAGAGTAG 855 47.25 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPVGDEGNEIDELKKSRTQDISHGSTGRGRGRGRGRGRGRPARNADRDHLQPSLDANPSTSIENRNMNLNPDVHMENHVEPSETAKEVGEANQAIQNFDLNADVNASEDSKIMAAPAVPVVPIEPARQPGPTTMESGPKAADEFPAWPLSDVDKMAIDPLQYSHLSTRIEEEDEDYDEE 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39328776 39332668 - Sed0020453.1 Sed07g2345 721209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2345 284 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Sed07g2345 284 MobiDBLite consensus disorder prediction 227 250 - -
Sed07g2345 284 FunFam dr1-associated corepressor homolog 1 86 - -
Sed07g2345 284 MobiDBLite consensus disorder prediction 90 172 - -
Sed07g2345 284 MobiDBLite consensus disorder prediction 158 172 - -
Sed07g2345 284 SUPERFAMILY Histone-fold 3 89 IPR009072 GO:0046982(InterPro)
Sed07g2345 284 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Sed07g2345 284 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 169 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Sed07g2345 284 MobiDBLite consensus disorder prediction 90 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1200 Sed-Chr5:18835636 Sed07g2345 Sed-Chr7:39328776 2.30E-40 dispersed
Sed07g2345 Sed-Chr7:39328776 Sed07g2346 Sed-Chr7:39328776 1.40E-147 tandem
Sed04g2683 Sed-Chr4:39203260 Sed07g2345 Sed-Chr7:39328776 4.40E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39177 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2345 K21752 - csv:101209714 428.328