Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2346 ATGAAGAAGAAGCTCGATACCCGATTTCCTGCTGCTCGAATAAAAAAGATTATGCAAGCAGATGAGGATGTTGGAAAGATAGCATTGGCAGTACCTGTTTTAGTTTCTAAAGCATTGGAACTATTCTTGCAAGACCTCTGCGATCGTACATATGAGATAACCCTACAAAGAGGAGCAAAGACCATGAACTCATTGCACTTAAAGCACTGTGTTCAAAGCTATAGTGTCTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCAGTTGGCGACGAGGGCAATGAAATTGATGAGTTGAAGAAGAGCAGAACGGACATAAGCCATGGCAGCACTGGTAGAGGAAGAGGACGGGGACGAGGAAGGGGTCGAGGACGGCCTGCTCGAAATGCGGATAGGGATCACCTCCAACCTAGCCTCGACGCCAACCCTAGCACATCTATAGAAAACAGGAACATGAACCTCAACCCAGATGTGCACATGGAGAACCACGTTGAGCCTAGCGAAACAGCAAAAGAAGTCGGCGAAGCTAATCAAGCTATCCAGAACTTTGATCTCAATGCAGATGTCAATGCCAGTGAAGACTCCAAGATTATGGCAGCACCAGCAGTACCAGTAGTGCCCATTGAACCAGCCAGGCAGCCCGGGCCAACTACTATGGAGTCCGGGCCTAAAGCTGCTGACGAGTTCCCTGCCTGGCCTCTATCTGACGTGGACAAAATGGCAATTGACCCTCTCCAATATTCCCATCTCAGCACAAGAATAGAAGAGGAAGATGAAGATTATGATGAAGAGTAG 852 47.18 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPVGDEGNEIDELKKSRTDISHGSTGRGRGRGRGRGRGRPARNADRDHLQPSLDANPSTSIENRNMNLNPDVHMENHVEPSETAKEVGEANQAIQNFDLNADVNASEDSKIMAAPAVPVVPIEPARQPGPTTMESGPKAADEFPAWPLSDVDKMAIDPLQYSHLSTRIEEEDEDYDEE 283
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 39328776 39332668 - Sed0020453.2 Sed07g2346 721210
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2346 283 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 155 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Sed07g2346 283 FunFam dr1-associated corepressor homolog 1 86 - -
Sed07g2346 283 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Sed07g2346 283 SUPERFAMILY Histone-fold 3 89 IPR009072 GO:0046982(InterPro)
Sed07g2346 283 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Sed07g2346 283 MobiDBLite consensus disorder prediction 226 249 - -
Sed07g2346 283 MobiDBLite consensus disorder prediction 157 173 - -
Sed07g2346 283 MobiDBLite consensus disorder prediction 90 131 - -
Sed07g2346 283 MobiDBLite consensus disorder prediction 90 173 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2683 Sed-Chr4:39203260 Sed07g2346 Sed-Chr7:39328776 1.10E-112 dispersed
Sed07g2345 Sed-Chr7:39328776 Sed07g2346 Sed-Chr7:39328776 1.40E-147 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39178 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2346 K21752 - csv:101209714 423.705