Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g2346 | ATGAAGAAGAAGCTCGATACCCGATTTCCTGCTGCTCGAATAAAAAAGATTATGCAAGCAGATGAGGATGTTGGAAAGATAGCATTGGCAGTACCTGTTTTAGTTTCTAAAGCATTGGAACTATTCTTGCAAGACCTCTGCGATCGTACATATGAGATAACCCTACAAAGAGGAGCAAAGACCATGAACTCATTGCACTTAAAGCACTGTGTTCAAAGCTATAGTGTCTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCAGTTGGCGACGAGGGCAATGAAATTGATGAGTTGAAGAAGAGCAGAACGGACATAAGCCATGGCAGCACTGGTAGAGGAAGAGGACGGGGACGAGGAAGGGGTCGAGGACGGCCTGCTCGAAATGCGGATAGGGATCACCTCCAACCTAGCCTCGACGCCAACCCTAGCACATCTATAGAAAACAGGAACATGAACCTCAACCCAGATGTGCACATGGAGAACCACGTTGAGCCTAGCGAAACAGCAAAAGAAGTCGGCGAAGCTAATCAAGCTATCCAGAACTTTGATCTCAATGCAGATGTCAATGCCAGTGAAGACTCCAAGATTATGGCAGCACCAGCAGTACCAGTAGTGCCCATTGAACCAGCCAGGCAGCCCGGGCCAACTACTATGGAGTCCGGGCCTAAAGCTGCTGACGAGTTCCCTGCCTGGCCTCTATCTGACGTGGACAAAATGGCAATTGACCCTCTCCAATATTCCCATCTCAGCACAAGAATAGAAGAGGAAGATGAAGATTATGATGAAGAGTAG | 852 | 47.18 | MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPVGDEGNEIDELKKSRTDISHGSTGRGRGRGRGRGRGRPARNADRDHLQPSLDANPSTSIENRNMNLNPDVHMENHVEPSETAKEVGEANQAIQNFDLNADVNASEDSKIMAAPAVPVVPIEPARQPGPTTMESGPKAADEFPAWPLSDVDKMAIDPLQYSHLSTRIEEEDEDYDEE | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 39328776 | 39332668 | - | Sed0020453.2 | Sed07g2346 | 721210 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g2346 | 283 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 4 | 155 | IPR050568 | GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER) | |
| Sed07g2346 | 283 | FunFam | dr1-associated corepressor homolog | 1 | 86 | - | - | |
| Sed07g2346 | 283 | Gene3D | Histone, subunit A | 1 | 86 | IPR009072 | GO:0046982(InterPro) | |
| Sed07g2346 | 283 | SUPERFAMILY | Histone-fold | 3 | 89 | IPR009072 | GO:0046982(InterPro) | |
| Sed07g2346 | 283 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 8 | 71 | IPR003958 | - | |
| Sed07g2346 | 283 | MobiDBLite | consensus disorder prediction | 226 | 249 | - | - | |
| Sed07g2346 | 283 | MobiDBLite | consensus disorder prediction | 157 | 173 | - | - | |
| Sed07g2346 | 283 | MobiDBLite | consensus disorder prediction | 90 | 131 | - | - | |
| Sed07g2346 | 283 | MobiDBLite | consensus disorder prediction | 90 | 173 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2683 | Sed-Chr4:39203260 | Sed07g2346 | Sed-Chr7:39328776 | 1.10E-112 | dispersed | |
| Sed07g2345 | Sed-Chr7:39328776 | Sed07g2346 | Sed-Chr7:39328776 | 1.40E-147 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 39178 | PF00808 | CBFD_NFYB_HMF | 2.10E-19 | CL0012 | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g2346 | K21752 | - | csv:101209714 | 423.705 |