Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g2384 | ATGTCTCGGAAATCTCAGGCGATGGTTACATTGCAATCCATTAAATCCATGCCAGTTAATTCTCGGTTCATGATTCCACAAGCTGCTGAAGCTTTGGAAGAGCCTTATAATCGGAATGTAAACAACGTGGAAGCTAGTTCGTTAATTCATGGTGAGAATGGTGTTTCTGGAGATGATTCCGTCAATCGACTTCAAAACAGTATGAACAATATTGGCGAGCTGAATGACGACTCACCATATAATTGCAATGTTAACTCAGTGGAAGAAAGACCCACCATGGAAGATGGAGAAGATGGTTTTATGTCTTCACCTTCACCTTCAATTTCGGCTTCACATAGTGAACACAGGTGGGGTGATACATCCTCCTACAAGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTAAAGATATTGTCAACCGCAGGAACAGAGTTAGTAGTTTCACTGGCTGATGAAAAGGTGTTAAAGGTGAAAGCTGAAGATTTAATTCCTGCAAATCCAGATATCCTTGATGGTGTTGATGATCTTATGCAACTTAGCTATTTAAACGAGCCTTCAGTGTTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGGCCAGTTCTAGTTGCTATCAATCCCTTTAAAAAAGTTGATTTGTATGGAAATGATTACATAGAAGCATACAAGCGCAAAGAAATTCAGAGCCCACATGTTTATGCCATTACAGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGTGGTGAAAGTGGGGCTGGAAAAACTGAAACAGCAAAGATAGCCATGCAGTATTTGGCATCTCTTGGCGGTGGAAGTGGAATAGAACATGAGATATTAAAGACCAATCCTATCTTAGAGGCTTTTGGAAATGCTAAAACATTGAGAAATGATAACTCAAGCCGCTTCGGAAAATTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCTGGTGCAAACATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTTGTCCAATGTATGGAGGGAGAAAGGTCATACCACATCTTTTATCAACTTTGTAGTGGGGCTCCGCCTGCACTTAAAGAGAGGTTGAACTTGAGAAAAGCGGAAGAGTACAAATATCTCAGCCAGAGCAATTGTTTTTCAATAAGAAAAGTAAATGATGCTGAAGAGTTTCGTACAGTCACGGAAGCCCTAGATATCGTCCATATTAGCAAAGATGATCAGCTCAATGTATTTGCTATGCTTTCTGCTGTGCTGTGGCTGGGAAATGTTTCCTTTAGTGTGATTGACAATGAGAATCACGTGGAAGCCGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAGTGTGAGATTGAGGAGCTTAAACTAGCTTTATCAACTCGAAAAATGAGAGTTGGGAATGACAACATTGTCCAAAAGCTTACTCAACCTCAGGCAATTGACACAAGGGATGCTTTGGCAAAGTCAATTTATGCTTGTTTATTTGAGTGGCTGGTTGAACAGATCAACAAATCTCTTGGTGTAGGCAAACGACGCACCGGCAGATCCATCAGCATTCTTGATATTTATGGCTTTGAGTCCTTTGATAGGAATAGTTTTGAACAATTCTGCATTAACTATGCAAATGAGAGACTTCAGCAGCATTTCAATCGTCATCTATTTAAACTAGAGCAGGAGGAATATATTCAAGATGGCATTGACTGGGCAAAAGTTGATTTTGATGACAACCAAGACTGTCTCAGTCTGTTTGAAAAGAAACCATTGGGATTGTTGTCCCTGTTAGATGAGGAGTCGACTTTTCCAAATGGCACAGACTTGACCTTTGCAAACAAGCTTAAGCAGCATTTGGGTCCTCATTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTTACCGTCTGCCATTATGCAGGAGAGGTCACTTATGACACAACTAGTTTTCTGGAGAAGAATAGGGACTTGCTACATTTAGATTCTATTCAACTCCTATCCTCTTGCTCATGCCATCTCCCTCAGATTTTTGCATCCAATTTGCTAACTCAATCGGAAAAGTCCATAGGTGGCACGTTACATAAGTCTGGTGGTGCAGAATCCCAAAAACTAAGTGTTGCAAGAAAATTTAAGGGTCAATTATTTCAATTGATGCTTCGTCTTGAAAATACAACACCTCATTTCATCCGTTGCATCAAGCCCAACAACCTTCAGTCTCCCAGATTGTATGAACAAGGACTTGTATTACAACAGTTAAAATGTTGTGGGGTCTTAGAAGTGGTTCGGATATCACGAGCTGGTTTTCCTACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTACAAGAAAGCGTTTCATCGCAGGATCCACTAAGTGTCTCAGTTGCAATTCTTCATCAATTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGTGTGCTCGAAGATACAAGAAACCGTACCATCCACGGGATTCTCTGTGTTCAAAGCTGCTATAGAGGGCACCTGGCTAGACGCCATCTCAAAGAGCTGAAGAACGGAATTTCTGTACTTCAGTCATTTGTACGTGGGGTGAAAACCAGAAAAGAGTATGCAGTTTTGATACGAAGGCATAGGGCTGCTATTTCTATACAGAAATGTGTGAAAGCCAGAATTGCTAGAGAACGTTTGAAGAAAGTCAGTGATGCATCACTTGTGATACAATCAGTTATTCGTGGCTGGTTGGTCAGAAGATGCTCAGGAGACATAGGATTAATGCCTGGTGGCCCGGCGGGAAATTGGTCAGGTGAGGTGCTTGTCAAGTCATCATTCCTTGCAGAATTACAACGCCGTGTCCTGAGAGCAGAGGCTGCTTTGAGAGACAAAGAAGAGGAAAACGACATTCTCCATCAGCGCGTCCAACAGTACGAGAATCGTTGGTCAGAGTACGAACTGAAAATGAAGTCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAATCTAGCCTCTCCATTGCAAAGAAAAGCTTATCAGTTGATGATTCAGAGAGAAATTCCGACGCATCGGTCAATGCAAGTGATGACAGAGGATACAGCTGGGAAATGGGCAGCAACAACACAGCTAATGGAAGCAATGGAGCAAGACCAATGAGCGCAGGTCTCAGCGTCATTAGCCGTTTGGCCGAAGAATTCGAACAAAGAAGTCAAGTGTTTGGCGACGATGCGAAGTTCTTGGTAGAGGTAAAATCTGGTCAAGTCGAGGCGAGTCTTGACCCGGATAGGGAACTCAGAAGGTTGAAGCAAATGTTTGAAGCATGGAAGAAAGATTACACGGGTAGGTTGCGCGAGACGAAACTGATTTTGAGTAGGTTTGGGACTGAAGGAGCCATGGATAGGGTGAAAAAGAAATGGTGGGTGAGGAGGAACAGCACAAAGTATAGTTAA | 3525 | 41.45 | MSRKSQAMVTLQSIKSMPVNSRFMIPQAAEALEEPYNRNVNNVEASSLIHGENGVSGDDSVNRLQNSMNNIGELNDDSPYNCNVNSVEERPTMEDGEDGFMSSPSPSISASHSEHRWGDTSSYKPRKILQSWFKLPNGNWDLVKILSTAGTELVVSLADEKVLKVKAEDLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIEAYKRKEIQSPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGSGIEHEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCMEGERSYHIFYQLCSGAPPALKERLNLRKAEEYKYLSQSNCFSIRKVNDAEEFRTVTEALDIVHISKDDQLNVFAMLSAVLWLGNVSFSVIDNENHVEAVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDNIVQKLTQPQAIDTRDALAKSIYACLFEWLVEQINKSLGVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLGPHSSFRGERGKAFTVCHYAGEVTYDTTSFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNLLTQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNLQSPRLYEQGLVLQQLKCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESVSSQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTIHGILCVQSCYRGHLARRHLKELKNGISVLQSFVRGVKTRKEYAVLIRRHRAAISIQKCVKARIARERLKKVSDASLVIQSVIRGWLVRRCSGDIGLMPGGPAGNWSGEVLVKSSFLAELQRRVLRAEAALRDKEEENDILHQRVQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLSVDDSERNSDASVNASDDRGYSWEMGSNNTANGSNGARPMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYTGRLRETKLILSRFGTEGAMDRVKKKWWVRRNSTKYS | 1174 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 39651943 | 39665508 | - | Sed0014373.1 | Sed07g2384 | 721248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g2384 | 1174 | Gene3D | - | 856 | 903 | - | - | |
| Sed07g2384 | 1174 | Gene3D | - | 904 | 945 | - | - | |
| Sed07g2384 | 1174 | MobiDBLite | consensus disorder prediction | 1058 | 1075 | - | - | |
| Sed07g2384 | 1174 | ProSiteProfiles | IQ motif profile. | 902 | 929 | - | - | |
| Sed07g2384 | 1174 | Gene3D | - | 785 | 852 | - | - | |
| Sed07g2384 | 1174 | PRINTS | Myosin heavy chain signature | 305 | 332 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2384 | 1174 | PRINTS | Myosin heavy chain signature | 590 | 618 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2384 | 1174 | PRINTS | Myosin heavy chain signature | 209 | 228 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2384 | 1174 | PRINTS | Myosin heavy chain signature | 537 | 565 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2384 | 1174 | PRINTS | Myosin heavy chain signature | 263 | 288 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2384 | 1174 | Gene3D | - | 361 | 417 | - | - | |
| Sed07g2384 | 1174 | PANTHER | MYOSIN | 131 | 1164 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed07g2384 | 1174 | Gene3D | Kinesin motor domain | 178 | 784 | IPR036961 | - | |
| Sed07g2384 | 1174 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 418 | 526 | - | - | |
| Sed07g2384 | 1174 | SMART | MYSc_2a | 173 | 852 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2384 | 1174 | ProSiteProfiles | Myosin motor domain profile. | 179 | 851 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2384 | 1174 | ProSiteProfiles | IQ motif profile. | 876 | 905 | - | - | |
| Sed07g2384 | 1174 | FunFam | Unconventional myosin-XIX | 549 | 741 | - | - | |
| Sed07g2384 | 1174 | FunFam | Myosin heavy chain | 361 | 417 | - | - | |
| Sed07g2384 | 1174 | SMART | iq_5 | 852 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2384 | 1174 | SMART | iq_5 | 901 | 923 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2384 | 1174 | SMART | iq_5 | 875 | 897 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2384 | 1174 | SMART | iq_5 | 924 | 946 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2384 | 1174 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 126 | 175 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2384 | 1174 | Pfam | Myosin head (motor domain) | 181 | 839 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2384 | 1174 | Gene3D | - | 549 | 741 | - | - | |
| Sed07g2384 | 1174 | MobiDBLite | consensus disorder prediction | 102 | 116 | - | - | |
| Sed07g2384 | 1174 | CDD | MYSc_Myo8 | 193 | 839 | IPR036022 | - | |
| Sed07g2384 | 1174 | Coils | Coil | 970 | 1018 | - | - | |
| Sed07g2384 | 1174 | ProSiteProfiles | IQ motif profile. | 855 | 881 | - | - | |
| Sed07g2384 | 1174 | MobiDBLite | consensus disorder prediction | 1037 | 1075 | - | - | |
| Sed07g2384 | 1174 | Pfam | IQ calmodulin-binding motif | 880 | 896 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2384 | 1174 | Pfam | IQ calmodulin-binding motif | 857 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2384 | 1174 | Pfam | IQ calmodulin-binding motif | 927 | 943 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2384 | 1174 | MobiDBLite | consensus disorder prediction | 90 | 120 | - | - | |
| Sed07g2384 | 1174 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 152 | 900 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g3144 | Sed-Chr4:42237027 | Sed07g2384 | Sed-Chr7:39651943 | 8.80E-297 | dispersed | |
| Sed07g2384 | Sed-Chr7:39651943 | Sed07g2629 | Sed-Chr7:41760282 | 1.90E-291 | dispersed | |
| Sed07g2384 | Sed-Chr7:39651943 | Sed07g2385 | Sed-Chr7:39651943 | 0.00E+00 | tandem | |
| Sed04g2721 | Sed-Chr4:39520001 | Sed07g2384 | Sed-Chr7:39651943 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g2384 | - | - | - | 0.0 |