Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g2387 | ATGTCCAATTCAGAAACTGTAAACGGGACCTCCATTGACACCCACAAAAATGGAGCCCTCGTCGTCAAGAAGCCGCCGGCGAAAGACCGTCACAGCAAGGTCGACGGCCGTGGCCGCCGCATCCGTATGCCTATCATCTGCGCCGCTCGGGTATTCCAGTTGACTCGGGAACTGGGTCACAAATCCGACGGCCAAACCATCGAGTGGCTCCTCCGTCAGGCCGAGCCCTCCATCATCGCCGCTACCGGCACCGGCACCACTCCGGCCAACTTCTCCTCCGTCTCTCCCTCCGCCAGAGTCAACGGCGGCTCCGCCTCTTCCACTCTCTCCCTCTCTTCCACCCCCACGCCGTTCATCCTCGGCAAGCGCGTTCGCTCCGACGACGACGGTGGGAAGGACGACGGCGGGTTGGGAGTCGGTCCGATGGGACCGCCGGGTGGTTACTGGGCGATTCCGGCCAGATCGGATTACGGGCAGTTGTGGAGCTTTGCCGCGGCGGCGGCCGCTCCGGCGGAGATGGGGATTTCTCAGTCGGCGGCGTTGTTTGCCCAACAGCAGCAGCAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCGAGAGTGGGGAATTACCTTCCCGGTCATCTGAATTTACTGGCGTCCTTGTCCGGCGGCCATGGTTCCGGCCGGCGAGAAGATGAACACCGCTCATAA | 690 | 63.04 | MSNSETVNGTSIDTHKNGALVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSPSARVNGGSASSTLSLSSTPTPFILGKRVRSDDDGGKDDGGLGVGPMGPPGGYWAIPARSDYGQLWSFAAAAAAPAEMGISQSAALFAQQQQQQQPIREASAARVGNYLPGHLNLLASLSGGHGSGRREDEHRS | 229 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 39681351 | 39682783 | - | Sed0018768.1 | Sed07g2387 | 721251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g2387 | 229 | MobiDBLite | consensus disorder prediction | 85 | 141 | - | - | |
| Sed07g2387 | 229 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 24 | 190 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER) | |
| Sed07g2387 | 229 | MobiDBLite | consensus disorder prediction | 85 | 119 | - | - | |
| Sed07g2387 | 229 | Pfam | TCP family transcription factor | 27 | 128 | IPR017887 | - | |
| Sed07g2387 | 229 | ProSiteProfiles | TCP domain profile. | 27 | 81 | IPR017887 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g1538 | Sed-Chr6:40133483 | Sed07g2387 | Sed-Chr7:39681351 | 3.40E-32 | dispersed | |
| Sed07g2387 | Sed-Chr7:39681351 | Sed12g1943 | Sed-Chr12:30515749 | 7.10E-30 | dispersed | |
| Sed03g0942 | Sed-Chr3:5846602 | Sed07g2387 | Sed-Chr7:39681351 | 4.40E-60 | wgd | |
| Sed04g2781 | Sed-Chr4:39860997 | Sed07g2387 | Sed-Chr7:39681351 | 6.70E-63 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 39184 | PF03634 | TCP | 3.60E-33 | No_clan | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g2387 | K16221 | - | csv:101206050 | 291.967 |