Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2403 ATGGCTTACGTGGCAAAATGTACGAATTCTCCACCGACGCCGATCAGTACTAATTACTCCCCCTCTTCTTCTCCGGCAAGTTCTCAGCCGTCGTCGCCGCCGCCGCCGACGGTGGTGCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGCCGCCGGTGCGTCGAGAAGTGCGTTTTGGCGCCTTATTTTCCTCCCACAGACCCTCTCAAGTTCACCATTGCTCATAAAGTCTTTGGTGCTAGCAATATCATCAAGTTCTTACAAGAACTTCCAGAGTCTCAGAGAACAGATGCAGTGAGTAGTATGGTGTATGAAGCAAATGCACGACTACGAGACCCAGTGTACGGTAGCGCAGGTGCAATTTGCCAACTACAAGCACAAATATGCGAGTTACAAGCTCAACTAGCCAAGGCAAGAGCAGCAGTTGCAAATATGCAACAACAACAAGAGAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAATCACCGGAGCCCGTTTGGATACCCGAACTTGTCGACACTACTTGCTTCCTCGATGATGCCACACTTAGCTCGTCCTTGGGGCCGCTATGGACGTGA 582 51.55 MAYVAKCTNSPPTPISTNYSPSSSPASSQPSSPPPPTVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHKVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQAQICELQAQLAKARAAVANMQQQQENLLALICMEMRQSPEPVWIPELVDTTCFLDDATLSSSLGPLWT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39877444 39879231 - Sed0006192.1 Sed07g2403 721267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2403 193 MobiDBLite consensus disorder prediction 1 37 - -
Sed07g2403 193 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 150 - -
Sed07g2403 193 MobiDBLite consensus disorder prediction 9 26 - -
Sed07g2403 193 Coils Coil 131 155 - -
Sed07g2403 193 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Sed07g2403 193 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0981 Sed-Chr1:7263903 Sed07g2403 Sed-Chr7:39877444 3.20E-41 dispersed
Sed05g2881 Sed-Chr5:39841616 Sed07g2403 Sed-Chr7:39877444 3.70E-43 dispersed
Sed07g2403 Sed-Chr7:39877444 Sed07g2592 Sed-Chr7:41488810 9.20E-31 dispersed
Sed04g2762 Sed-Chr4:39725827 Sed07g2403 Sed-Chr7:39877444 1.90E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39185 PF03195 LOB 3.60E-40 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2403 - - - 0.0