Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2408 ATGGCAGAGCTTCCCACCAGTCCGGCCGAGAGCGGCGGCGACCAGAGCCCCAACACCGGCGCCGGCTCCGGCGGCGTTCGCGAGCAGGATCGTTACCTCCCCATCGCCAACATCAGTCGGATCATGAAGAAGGCCTTGCCTGCCAACGGCAAGATCGCTAAGGACGCTAAGGACACCGTCCAGGAGTGCGTCTCTGAGTTCATTAGCTTCATCACCAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCGATGGCTACGTTGGGCTTCGAGGATTTTATCGATCCCCTTAAGTCCTACCTTACTAGGTACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGACGCCGTCGGGGCCTTGCCTGGTCAAAATTCCCAGCAGTACCTGCAGCATGGAGCAATGACCTACATTAACACTCAAGGACAACATTTGATCATTCCTTCAATGCAGAATAACGAGTAG 525 53.71 MAELPTSPAESGGDQSPNTGAGSGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDFIDPLKSYLTRYRELECDAKGSSRGGDESAKRDAVGALPGQNSQQYLQHGAMTYINTQGQHLIIPSMQNNE 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39930068 39934672 - Sed0011055.1 Sed07g2408 721272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2408 174 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g2408 174 MobiDBLite consensus disorder prediction 9 23 - -
Sed07g2408 174 MobiDBLite consensus disorder prediction 122 142 - -
Sed07g2408 174 Gene3D Histone, subunit A 22 157 IPR009072 GO:0046982(InterPro)
Sed07g2408 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed07g2408 174 SUPERFAMILY Histone-fold 29 131 IPR009072 GO:0046982(InterPro)
Sed07g2408 174 FunFam Nuclear transcription factor Y subunit B-3 21 146 - -
Sed07g2408 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Sed07g2408 174 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Sed07g2408 174 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Sed07g2408 174 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Sed07g2408 174 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2754 Sed-Chr4:39682936 Sed07g2408 Sed-Chr7:39930068 4.40E-75 dispersed
Sed04g2755 Sed-Chr4:39682936 Sed07g2408 Sed-Chr7:39930068 3.50E-75 dispersed
Sed07g2408 Sed-Chr7:39930068 Sed08g2902 Sed-Chr8:40048530 1.40E-41 dispersed
Sed07g2408 Sed-Chr7:39930068 Sed07g2409 Sed-Chr7:39930068 1.80E-94 tandem
Sed02g0739 Sed-Chr2:45156867 Sed07g2408 Sed-Chr7:39930068 4.70E-58 wgd
Sed04g2752 Sed-Chr4:39682936 Sed07g2408 Sed-Chr7:39930068 4.40E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39186 PF00808 CBFD_NFYB_HMF 5.80E-28 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2408 K08065 - csv:101223123 305.834