Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2408 | ATGGCAGAGCTTCCCACCAGTCCGGCCGAGAGCGGCGGCGACCAGAGCCCCAACACCGGCGCCGGCTCCGGCGGCGTTCGCGAGCAGGATCGTTACCTCCCCATCGCCAACATCAGTCGGATCATGAAGAAGGCCTTGCCTGCCAACGGCAAGATCGCTAAGGACGCTAAGGACACCGTCCAGGAGTGCGTCTCTGAGTTCATTAGCTTCATCACCAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCGATGGCTACGTTGGGCTTCGAGGATTTTATCGATCCCCTTAAGTCCTACCTTACTAGGTACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGACGCCGTCGGGGCCTTGCCTGGTCAAAATTCCCAGCAGTACCTGCAGCATGGAGCAATGACCTACATTAACACTCAAGGACAACATTTGATCATTCCTTCAATGCAGAATAACGAGTAG | 525 | 53.71 | MAELPTSPAESGGDQSPNTGAGSGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDFIDPLKSYLTRYRELECDAKGSSRGGDESAKRDAVGALPGQNSQQYLQHGAMTYINTQGQHLIIPSMQNNE | 174 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 39930068 | 39934672 | - | Sed0011055.1 | Sed07g2408 | 721272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2408 | 174 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 63 | 79 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed07g2408 | 174 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
Sed07g2408 | 174 | MobiDBLite | consensus disorder prediction | 122 | 142 | - | - | |
Sed07g2408 | 174 | Gene3D | Histone, subunit A | 22 | 157 | IPR009072 | GO:0046982(InterPro) | |
Sed07g2408 | 174 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 21 | 148 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Sed07g2408 | 174 | SUPERFAMILY | Histone-fold | 29 | 131 | IPR009072 | GO:0046982(InterPro) | |
Sed07g2408 | 174 | FunFam | Nuclear transcription factor Y subunit B-3 | 21 | 146 | - | - | |
Sed07g2408 | 174 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 32 | 96 | IPR003958 | - | |
Sed07g2408 | 174 | PRINTS | CCAAT-binding transcription factor subunit A signature | 60 | 78 | - | - | |
Sed07g2408 | 174 | PRINTS | CCAAT-binding transcription factor subunit A signature | 79 | 97 | - | - | |
Sed07g2408 | 174 | PRINTS | CCAAT-binding transcription factor subunit A signature | 98 | 116 | - | - | |
Sed07g2408 | 174 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2754 | Sed-Chr4:39682936 | Sed07g2408 | Sed-Chr7:39930068 | 4.40E-75 | dispersed | |
Sed04g2755 | Sed-Chr4:39682936 | Sed07g2408 | Sed-Chr7:39930068 | 3.50E-75 | dispersed | |
Sed07g2408 | Sed-Chr7:39930068 | Sed08g2902 | Sed-Chr8:40048530 | 1.40E-41 | dispersed | |
Sed07g2408 | Sed-Chr7:39930068 | Sed07g2409 | Sed-Chr7:39930068 | 1.80E-94 | tandem | |
Sed02g0739 | Sed-Chr2:45156867 | Sed07g2408 | Sed-Chr7:39930068 | 4.70E-58 | wgd | |
Sed04g2752 | Sed-Chr4:39682936 | Sed07g2408 | Sed-Chr7:39930068 | 4.40E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39186 | PF00808 | CBFD_NFYB_HMF | 5.80E-28 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2408 | K08065 | - | csv:101223123 | 305.834 |