Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2409 ATGGCAGAGCTTCCCACCAGTCCGGCCGAGAGCGGCGGCGACCAGAGCCCCAACACCGGCGCCGGCTCCGGCGGCGTTCGCGAGCAGGATCGTTACCTCCCCATCGCCAACATCAGTCGGATCATGAAGAAGGCCTTGCCTGCCAACGGCAAGATCGCTAAGGACGCTAAGGACACCGTCCAGGAGTGCGTCTCTGAGTTCATTAGCTTCATCACCAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCGATGGCTACGTTGGGCTTCGAGGATTTTATCGATCCCCTTAAGTCCTACCTTACTAGGTACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGACGCCGTCGGGGCCTTGCCTGGTCAAAATTCCCAGTACCTGCAGCATGGAGCAATGACCTACATTAACACTCAAGGACAACATTTGATCATTCCTTCAATGCAGAATAACGAGTAG 522 53.64 MAELPTSPAESGGDQSPNTGAGSGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDFIDPLKSYLTRYRELECDAKGSSRGGDESAKRDAVGALPGQNSQYLQHGAMTYINTQGQHLIIPSMQNNE 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39930068 39934672 - Sed0011055.2 Sed07g2409 721273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2409 173 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Sed07g2409 173 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Sed07g2409 173 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Sed07g2409 173 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g2409 173 MobiDBLite consensus disorder prediction 9 23 - -
Sed07g2409 173 SUPERFAMILY Histone-fold 29 131 IPR009072 GO:0046982(InterPro)
Sed07g2409 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Sed07g2409 173 Gene3D Histone, subunit A 22 153 IPR009072 GO:0046982(InterPro)
Sed07g2409 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 144 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed07g2409 173 MobiDBLite consensus disorder prediction 1 28 - -
Sed07g2409 173 FunFam Nuclear transcription factor Y subunit B-3 21 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2409 K08065 - - csv:101223123 299.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2409 Sed-Chr7:39930068 Sed08g2902 Sed-Chr8:40048530 1.60E-42 dispersed
Sed07g2408 Sed-Chr7:39930068 Sed07g2409 Sed-Chr7:39930068 1.80E-94 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g452 . . . Bda15g00184 Bpe04g01683 Bpe15g01076 . Bma08g01142 . . . . Car04g01334 . . . . . . . . . . . . . . . . . . Cone1ag1336 Cone5ag0323 . . . . . . Blo13g00735 . Bda14g00336 Bda15g00376 Bpe04g01683 . . Bma08g00961 Sed07g2409 . . . . . . . . Bhi07g01026 Tan04g0390 Cmetu10g1537 . Hepe01g0881 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2904 . 51 151 CCAAT-HAP3 Transcription Factor Family AT5G47670 84.2 6.6e-47 185.3
Sed05g3059 . 8 113 CCAAT-HAP3 Transcription Factor Family AT5G47670 66.0 1.1e-38 157.9
Sed01g0572 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 4.7e-37 152.5
Sed08g2902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.8 1.1e-36 151.4
Sed08g2904 . 16 173 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.3 1.3e-50 197.6
Sed01g0572 . 1 138 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.2 2.2e-57 219.5
Sed05g3059 . 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 89.0 3.7e-57 218.8
Sed08g2902 . 19 146 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.5 2.9e-46 182.6
Sed07g1707 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.4 8.5e-46 181.0
Sed04g1328 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed04g1329 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed04g1326 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed04g1327 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed04g1330 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed02g0739 . 11 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.3 7.2e-45 177.9
Sed02g0740 . 11 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.3 7.2e-45 177.9
Sed13g0981 . 79 173 CCAAT-HAP3 Transcription Factor Family AT4G14540 88.4 4.0e-43 172.2
Sed07g2408 . 9 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.9 1.5e-42 170.2
Sed07g2409 . 9 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.9 1.5e-42 170.2
Sed04g2752 . 24 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.6 5.7e-42 168.3
Sed04g2753 . 24 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.6 5.7e-42 168.3
Sed04g2754 . 24 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.6 5.7e-42 168.3
Sed04g2755 . 24 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.6 5.7e-42 168.3
Sed07g0338 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.0 5.0e-38 155.2
Sed09g1217 . 39 140 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.6 1.5e-37 153.7
Sed07g2408 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 2.7e-49 192.6
Sed07g2409 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 2.7e-49 192.6
Sed04g2752 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.9 3.5e-49 192.2
Sed04g2753 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.9 3.5e-49 192.2
Sed04g2754 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.9 3.5e-49 192.2
Sed04g2755 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.9 3.5e-49 192.2
Sed02g0739 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 6.6e-48 188.0
Sed02g0740 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 6.6e-48 188.0
Sed04g1328 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed04g1329 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed04g1326 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed04g1327 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed04g1330 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed05g3059 . 1 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.9 9.9e-44 174.1
Sed01g0572 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.7 1.1e-42 170.6
Sed08g2902 . 19 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.4 4.6e-41 165.2
Sed07g1707 . 17 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.7 1.8e-40 163.3
Sed13g0981 . 73 168 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.0 1.3e-38 157.1
Sed07g0338 . 43 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.6 8.1e-38 154.5
Sed09g1217 . 33 136 CCAAT-HAP3 Transcription Factor Family AT2G38880 68.9 5.3e-37 151.8
Sed09g1217 . 43 154 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.1 7.9e-44 174.5
Sed07g0338 . 44 147 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.0 7.4e-42 167.9
Sed08g2902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.2 3.7e-41 165.6
Sed01g0572 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 7.7e-39 157.9
Sed05g3059 . 14 113 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 1.0e-38 157.5
Sed07g1707 . 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 3.2e-37 152.5
Sed02g0739 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.0 4.2e-37 152.1
Sed02g0740 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.0 4.2e-37 152.1
Sed13g0981 . 79 173 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.7 7.2e-37 151.4
Sed02g0739 . 1 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 2.2e-63 239.6
Sed04g1328 . 1 187 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.1 3.5e-61 232.3
Sed04g1327 . 1 187 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.1 3.5e-61 232.3
Sed04g1329 . 1 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 1.2e-58 223.8
Sed04g1326 . 1 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 1.2e-58 223.8
Sed04g1330 . 1 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 1.2e-58 223.8
Sed02g0740 . 1 159 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.8 4.7e-58 221.9
Sed07g2409 . 10 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.8 4.1e-54 208.8
Sed07g2408 . 10 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.0 2.7e-53 206.1
Sed04g2752 . 12 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.0e-52 204.1
Sed04g2753 . 12 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.0e-52 204.1
Sed04g2754 . 12 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.0e-52 204.1
Sed04g2755 . 12 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.0e-52 204.1
Sed01g0572 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 5.0e-44 175.3
Sed05g3059 . 6 112 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.1 1.1e-43 174.1
Sed07g1707 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.5 4.7e-42 168.7
Sed08g2902 . 19 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 80.0 1.5e-40 163.7
Sed13g0981 . 79 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 80.4 8.3e-39 157.9
Sed07g0338 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.9 2.0e-37 153.3
Sed09g1217 . 44 146 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 1.3e-36 150.6
Sed05g3059 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 2.1e-44 176.8
Sed04g1328 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed04g1329 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed04g1326 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed04g1327 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed04g1330 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed02g0739 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 1.1e-43 174.5
Sed02g0740 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 1.1e-43 174.5
Sed07g1707 . 17 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 77.3 1.4e-43 174.1
Sed01g0572 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 1.4e-43 174.1
Sed08g2902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.3 7.6e-42 168.3
Sed13g0981 . 79 173 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.1 3.8e-41 166.0
Sed04g2752 . 29 129 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 7.1e-40 161.8
Sed04g2753 . 29 129 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 7.1e-40 161.8
Sed04g2754 . 29 129 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 7.1e-40 161.8
Sed04g2755 . 29 129 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 7.1e-40 161.8
Sed07g2408 . 13 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.3 1.2e-39 161.0
Sed07g2409 . 13 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.3 1.2e-39 161.0
Sed07g0338 . 46 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.6e-39 159.1
Sed09g1217 . 45 145 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 6.7e-38 155.2
Sed05g3059 . 1 118 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.0 8.0e-51 198.0
Sed01g0572 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.6 1.0e-50 197.6
Sed08g2902 . 19 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 86.9 6.5e-45 178.3
Sed07g2408 . 10 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.4 7.2e-44 174.9
Sed07g2409 . 10 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.4 7.2e-44 174.9
Sed07g1707 . 21 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.7 1.2e-43 174.1
Sed02g0739 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.7 2.1e-43 173.3
Sed02g0740 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.7 2.1e-43 173.3
Sed04g2752 . 29 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 2.7e-43 172.9
Sed04g2753 . 29 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 2.7e-43 172.9
Sed04g2754 . 29 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 2.7e-43 172.9
Sed04g2755 . 29 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 2.7e-43 172.9
Sed04g1328 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed04g1329 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed04g1326 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed04g1327 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed04g1330 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed13g0981 . 65 173 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.1 4.4e-41 165.6
Sed07g0338 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.3 5.4e-39 158.7
Sed09g1217 . 45 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 2.7e-38 156.4
Sed02g0739 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.4 1.8e-60 229.9
Sed04g1328 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed04g1329 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed04g1326 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed04g1327 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed04g1330 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed02g0740 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 3.7e-58 222.2
Sed07g2409 . 10 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.4 6.4e-55 211.5
Sed07g2408 . 10 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.3 9.3e-54 207.6
Sed04g2752 . 12 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.3 2.7e-53 206.1
Sed04g2753 . 12 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.3 2.7e-53 206.1
Sed04g2754 . 12 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.3 2.7e-53 206.1
Sed04g2755 . 12 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.3 2.7e-53 206.1
Sed01g0572 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 1.3e-44 177.2
Sed05g3059 . 6 121 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.2 1.8e-44 176.8
Sed07g1707 . 18 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 76.5 3.7e-42 169.1
Sed08g2902 . 19 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.1 5.3e-41 165.2
Sed13g0981 . 79 170 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.3 1.4e-38 157.1
Sed07g0338 . 45 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.8 5.5e-38 155.2
Sed09g1217 . 44 146 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 3.6e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39187 PF00808 CBFD_NFYB_HMF 5.70E-28 CL0012 Sed TF