Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2409 ATGGCAGAGCTTCCCACCAGTCCGGCCGAGAGCGGCGGCGACCAGAGCCCCAACACCGGCGCCGGCTCCGGCGGCGTTCGCGAGCAGGATCGTTACCTCCCCATCGCCAACATCAGTCGGATCATGAAGAAGGCCTTGCCTGCCAACGGCAAGATCGCTAAGGACGCTAAGGACACCGTCCAGGAGTGCGTCTCTGAGTTCATTAGCTTCATCACCAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCGATGGCTACGTTGGGCTTCGAGGATTTTATCGATCCCCTTAAGTCCTACCTTACTAGGTACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGACGCCGTCGGGGCCTTGCCTGGTCAAAATTCCCAGTACCTGCAGCATGGAGCAATGACCTACATTAACACTCAAGGACAACATTTGATCATTCCTTCAATGCAGAATAACGAGTAG 522 53.64 MAELPTSPAESGGDQSPNTGAGSGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDFIDPLKSYLTRYRELECDAKGSSRGGDESAKRDAVGALPGQNSQYLQHGAMTYINTQGQHLIIPSMQNNE 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39930068 39934672 - Sed0011055.2 Sed07g2409 721273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2409 173 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Sed07g2409 173 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Sed07g2409 173 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Sed07g2409 173 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g2409 173 MobiDBLite consensus disorder prediction 9 23 - -
Sed07g2409 173 SUPERFAMILY Histone-fold 29 131 IPR009072 GO:0046982(InterPro)
Sed07g2409 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Sed07g2409 173 Gene3D Histone, subunit A 22 153 IPR009072 GO:0046982(InterPro)
Sed07g2409 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 144 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed07g2409 173 MobiDBLite consensus disorder prediction 1 28 - -
Sed07g2409 173 FunFam Nuclear transcription factor Y subunit B-3 21 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2409 Sed-Chr7:39930068 Sed08g2902 Sed-Chr8:40048530 1.60E-42 dispersed
Sed07g2408 Sed-Chr7:39930068 Sed07g2409 Sed-Chr7:39930068 1.80E-94 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39187 PF00808 CBFD_NFYB_HMF 5.70E-28 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2409 K08065 - csv:101223123 299.286