Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2411 ATGTTGGATCTTAATGACTCGATTACGAACTACGACGAAACGACGAATCGGATTGAAATGGAAGATTCCGAGACTTCTAATTCCTCTGTTTTGAATGCCGATGAAGTCTGCAACAGCAGAGACGAAGATACCTCTGTTTTAATCTTCGATATACTAAAAAAAGAAAATTCCGGCAGTGGAGGCGGCGGCGCGTCGCCGGAATTGGTGACTCAGACGCTGTTTCCGGTGGACGGAGGGTGGGGGGAAAGTGGGTCGCCGGTGCTGAGGACCCATTGGTTGAATTTGTCGTCGACGGCGGATTCCGGCGGCGGCGGACCGGCGGAGGTGAAAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTTACTTTTTACCGGCGGACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGGTTTGATACTGCTGATGCTGCAGCAAGGGCTTACGATCGAGCAGCAATAAAATTTCGAGGAATCGATGCAGACATAAACTTCAACATAAGTGATTATGATGAAGATATGAAACATATGAAGGATTTAAACAAAGAAGAATTTGTGCAAGTTCTTCGCCGACAAAGCACAGGATTTTCTCGTGGAGGTTCAAAGCTAAGAGGATTATCTCTTCAAAAGTTTGGAAAATGGGAAGCGCAAATGAGCCAAATCATGGGAAAGAATGGAATTGAGCAGAGGTTTTGTAAAGAGGAGACAATGGTGGCTCCAAGCAATGAAGGCAAAGGGCATAATCTTGATTTGAGCATTGGAGGAATTTTCAACTACCATTTAAGTAATTCTTCCCACAAGCTCAACATTGAAAGACCAAAGAATGAACATAATGGTTGTGCTTATGCTGTTGGTGGACAACAACCTCAAATTCCTCCTTCTATGTGGTCTGGTTTTTACTCTGGTCTTTTAGCAGATAATGAGGAAAAAGGGAGAGTGAAGAGAAGCAATGAGTCCACAAAGATCCTTCCGAGTTGGGGATGGCAAATGCCAACGCCAATGCGAATTCAAGGAAATTCGAGCAATGGAATACGAGCAAACGAAGAAGCTCATGATTCCAAGAGTACTGCAGCATCATCAGGATTCTCTTCCTCTCCTAATTTTGGTTCACTTTATGTTCAAAACAACACTGCCCTCCACAAAACTCACTGCCTTCCAACACCTTCCACCAACATTTCTTGA 1248 45.59 MLDLNDSITNYDETTNRIEMEDSETSNSSVLNADEVCNSRDEDTSVLIFDILKKENSGSGGGGASPELVTQTLFPVDGGWGESGSPVLRTHWLNLSSTADSGGGGPAEVKIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTADAAARAYDRAAIKFRGIDADINFNISDYDEDMKHMKDLNKEEFVQVLRRQSTGFSRGGSKLRGLSLQKFGKWEAQMSQIMGKNGIEQRFCKEETMVAPSNEGKGHNLDLSIGGIFNYHLSNSSHKLNIERPKNEHNGCAYAVGGQQPQIPPSMWSGFYSGLLADNEEKGRVKRSNESTKILPSWGWQMPTPMRIQGNSSNGIRANEEAHDSKSTAASSGFSSSPNFGSLYVQNNTALHKTHCLPTPSTNIS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39948050 39952096 - Sed0014820.1 Sed07g2411 721275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2411 415 ProSiteProfiles AP2/ERF domain profile. 132 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2411 415 MobiDBLite consensus disorder prediction 1 37 - -
Sed07g2411 415 FunFam AP2-like ethylene-responsive transcription factor 131 190 - -
Sed07g2411 415 SUPERFAMILY DNA-binding domain 131 190 IPR016177 GO:0003677(InterPro)
Sed07g2411 415 SMART rav1_2 132 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2411 415 MobiDBLite consensus disorder prediction 346 368 - -
Sed07g2411 415 Pfam AP2 domain 132 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2411 415 MobiDBLite consensus disorder prediction 21 35 - -
Sed07g2411 415 MobiDBLite consensus disorder prediction 346 385 - -
Sed07g2411 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 26 249 - -
Sed07g2411 415 Gene3D AP2/ERF domain 131 190 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2411 415 CDD AP2 132 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2748 Sed-Chr4:39658370 Sed07g2411 Sed-Chr7:39948050 2.30E-124 dispersed
Sed07g2411 Sed-Chr7:39948050 Sed14g0860 Sed-Chr14:17108621 5.90E-59 dispersed
Sed02g0736 Sed-Chr2:45089942 Sed07g2411 Sed-Chr7:39948050 5.50E-61 wgd
Sed04g2747 Sed-Chr4:39658370 Sed07g2411 Sed-Chr7:39948050 2.30E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39188 PF00847 AP2 3.50E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2411 K09284 - csv:101204131 598.971