Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2413 | ATGGGATGGTTTCTCTGTTCTGGAATTTCAAACAAGAAGGATAAACCGCACCAGGATTACAACTACGAACACGATCAGATCCAATCCACTTCAGAAAAATTGATGGTAAAACCGTCGTTTAATGGGAAGAACGAGGCTCTAAAAGATGGAAGTTCTGATCAGATTTCAGCACGAACTACTACATTCTCATTCCGTGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCAGACTGTCTTTTAGGTGAAGGAGGTTTTGGTCAAGTATATAAAGGACGATTGGAGAGCATAAATCAGGCAGTTGCCATCAAGCAACTTGATCGAAATGGGCTTCAAGGAAACAGGGAATTCCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTCGTTAATTTAGTTGGCTATTGTGCAGATGGCGATCAAAGACTTTTGGTTTACGAATACATGCCATTGGGATCTTTGGAAGACCATCTACACGATCTTCCACCTGATAAAAAACGACTCGACTGGAACACACGAATGAAAATAGCTGCTGGTGCTGCTAAGGGCTTAGAGTATTTGCATGATAAAGCTAAGCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGACAATTACCATCCAAAGCTATCCGATTTCGGCTTGGCGAAATTGGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACTTATGGATATTGTGCTCCTGAATATGCAATGACTGGCCAGCTCACTTTGAAATCAGATGTTTATAGCTTTGGAGTTGTTCTGCTTGAAATCATTACTGGTAGAAAAGCTATTGACAATTCAAGAGCAGCAGGGGAACATAATTTGGTGGCTTGGGCACATCCCTTATTTAAAGACAGAAGGAAATTTTCGCAGATGGCTGATCCATTGCTCCAAGGACATTACCCTGTCAGAGGGTTATACCAAGCTCTTGCAGTAGCTGCGATGTGCATTCAGGAACAGCCTCATATGCGACCCCTTATCGCTGATGTCGTCACAGCCCTTACATATCTTGCCTACCAAAAATATGATCCCGAAACCCAGCCAGTTCAATCCGGTCGCAGTAGCTCGTCCACACCTCGATGTTCTAGACGAGAGCTATGA | 1143 | 43.57 | MGWFLCSGISNKKDKPHQDYNYEHDQIQSTSEKLMVKPSFNGKNEALKDGSSDQISARTTTFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQAVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKAKPPVIYRDLKCSNILLGDNYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAHPLFKDRRKFSQMADPLLQGHYPVRGLYQALAVAAMCIQEQPHMRPLIADVVTALTYLAYQKYDPETQPVQSGRSSSSTPRCSRREL | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 39992296 | 39997317 | - | Sed0021574.1 | Sed07g2413 | 721277 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2413 | 380 | SUPERFAMILY | Protein kinase-like (PK-like) | 60 | 365 | IPR011009 | - | |
Sed07g2413 | 380 | SMART | serkin_6 | 74 | 351 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g2413 | 380 | FunFam | Serine/threonine-protein kinase PBS1 | 151 | 366 | - | - | |
Sed07g2413 | 380 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 294 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed07g2413 | 380 | PANTHER | OS07G0668900 PROTEIN | 31 | 371 | - | - | |
Sed07g2413 | 380 | Gene3D | Phosphorylase Kinase; domain 1 | 45 | 150 | - | - | |
Sed07g2413 | 380 | FunFam | Serine/threonine-protein kinase PBS1 | 45 | 150 | - | - | |
Sed07g2413 | 380 | CDD | STKc_IRAK | 80 | 349 | - | - | |
Sed07g2413 | 380 | ProSitePatterns | Protein kinases ATP-binding region signature. | 80 | 103 | IPR017441 | GO:0005524(InterPro) | |
Sed07g2413 | 380 | Gene3D | Transferase(Phosphotransferase) domain 1 | 151 | 368 | - | - | |
Sed07g2413 | 380 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 197 | 209 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed07g2413 | 380 | ProSiteProfiles | Protein kinase domain profile. | 74 | 351 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g2413 | 380 | MobiDBLite | consensus disorder prediction | 360 | 380 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1017 | Sed-Chr1:7562682 | Sed07g2413 | Sed-Chr7:39992296 | 7.20E-145 | dispersed | |
Sed07g0216 | Sed-Chr7:1799457 | Sed07g2413 | Sed-Chr7:39992296 | 5.40E-127 | dispersed | |
Sed07g2413 | Sed-Chr7:39992296 | Sed12g0854 | Sed-Chr12:5311168 | 3.00E-158 | dispersed | |
Sed02g0724 | Sed-Chr2:45055854 | Sed07g2413 | Sed-Chr7:39992296 | 1.70E-156 | wgd | |
Sed04g2743 | Sed-Chr4:39601062 | Sed07g2413 | Sed-Chr7:39992296 | 9.80E-202 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79560 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-46 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2413 | - | - | - | 0.0 |