Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2413 ATGGGATGGTTTCTCTGTTCTGGAATTTCAAACAAGAAGGATAAACCGCACCAGGATTACAACTACGAACACGATCAGATCCAATCCACTTCAGAAAAATTGATGGTAAAACCGTCGTTTAATGGGAAGAACGAGGCTCTAAAAGATGGAAGTTCTGATCAGATTTCAGCACGAACTACTACATTCTCATTCCGTGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCAGACTGTCTTTTAGGTGAAGGAGGTTTTGGTCAAGTATATAAAGGACGATTGGAGAGCATAAATCAGGCAGTTGCCATCAAGCAACTTGATCGAAATGGGCTTCAAGGAAACAGGGAATTCCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTCGTTAATTTAGTTGGCTATTGTGCAGATGGCGATCAAAGACTTTTGGTTTACGAATACATGCCATTGGGATCTTTGGAAGACCATCTACACGATCTTCCACCTGATAAAAAACGACTCGACTGGAACACACGAATGAAAATAGCTGCTGGTGCTGCTAAGGGCTTAGAGTATTTGCATGATAAAGCTAAGCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGACAATTACCATCCAAAGCTATCCGATTTCGGCTTGGCGAAATTGGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACTTATGGATATTGTGCTCCTGAATATGCAATGACTGGCCAGCTCACTTTGAAATCAGATGTTTATAGCTTTGGAGTTGTTCTGCTTGAAATCATTACTGGTAGAAAAGCTATTGACAATTCAAGAGCAGCAGGGGAACATAATTTGGTGGCTTGGGCACATCCCTTATTTAAAGACAGAAGGAAATTTTCGCAGATGGCTGATCCATTGCTCCAAGGACATTACCCTGTCAGAGGGTTATACCAAGCTCTTGCAGTAGCTGCGATGTGCATTCAGGAACAGCCTCATATGCGACCCCTTATCGCTGATGTCGTCACAGCCCTTACATATCTTGCCTACCAAAAATATGATCCCGAAACCCAGCCAGTTCAATCCGGTCGCAGTAGCTCGTCCACACCTCGATGTTCTAGACGAGAGCTATGA 1143 43.57 MGWFLCSGISNKKDKPHQDYNYEHDQIQSTSEKLMVKPSFNGKNEALKDGSSDQISARTTTFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQAVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKAKPPVIYRDLKCSNILLGDNYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAHPLFKDRRKFSQMADPLLQGHYPVRGLYQALAVAAMCIQEQPHMRPLIADVVTALTYLAYQKYDPETQPVQSGRSSSSTPRCSRREL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 39992296 39997317 - Sed0021574.1 Sed07g2413 721277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2413 380 SUPERFAMILY Protein kinase-like (PK-like) 60 365 IPR011009 -
Sed07g2413 380 SMART serkin_6 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2413 380 FunFam Serine/threonine-protein kinase PBS1 151 366 - -
Sed07g2413 380 Pfam Protein tyrosine and serine/threonine kinase 78 294 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2413 380 PANTHER OS07G0668900 PROTEIN 31 371 - -
Sed07g2413 380 Gene3D Phosphorylase Kinase; domain 1 45 150 - -
Sed07g2413 380 FunFam Serine/threonine-protein kinase PBS1 45 150 - -
Sed07g2413 380 CDD STKc_IRAK 80 349 - -
Sed07g2413 380 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524(InterPro)
Sed07g2413 380 Gene3D Transferase(Phosphotransferase) domain 1 151 368 - -
Sed07g2413 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2413 380 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2413 380 MobiDBLite consensus disorder prediction 360 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1017 Sed-Chr1:7562682 Sed07g2413 Sed-Chr7:39992296 7.20E-145 dispersed
Sed07g0216 Sed-Chr7:1799457 Sed07g2413 Sed-Chr7:39992296 5.40E-127 dispersed
Sed07g2413 Sed-Chr7:39992296 Sed12g0854 Sed-Chr12:5311168 3.00E-158 dispersed
Sed02g0724 Sed-Chr2:45055854 Sed07g2413 Sed-Chr7:39992296 1.70E-156 wgd
Sed04g2743 Sed-Chr4:39601062 Sed07g2413 Sed-Chr7:39992296 9.80E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79560 PF07714 PK_Tyr_Ser-Thr 1.30E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2413 - - - 0.0