Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2417 ATGTGGAATATCACAAAACGAACGTCTCTTCGAGCAGCGCATCAAACACCAGGGCAGCTGAAAATGGAAGAAACTTTGCGAAATGGAATTTCTGAATATTCGAATTCCAAATGTCGTCCGATCAGTTCCGTTCTAAAAGAATCGAATGAGAAAGCGATCGATGCAAGTTGGGTTATTTTTGCAGAAAGGGGCCTGCAAAATCTCTCTTGGCAATCTGTGCTCAAGGTTTTTTCTACGGATAGCCATCAAGAAACTCAATGTTTTCTCATTGAAAGATTAATGCTGATGGTATCCGAAACTTTGATGAAGATTGTATCACCTTGCTGGAAACCATCTGTTGAAGGAGAAACTTCTAGTAGAGGTGGGGATGCAAGTGGTCGTGTTAGCGGGCTGTTGTGGTACAAGGATTCTGGCCGTCACATCAATGGAGAATTCTCAATGGCAGTTGTCCAGGCAAATAATTTGTTGGAAGATCGGAGCCAACTTGAGTCAGGGCCGCTGAGCTCTTTTGAATCGGGTCCGGTTGGAACGTTTGTTGGAATCTATGATGGCCACGGAGGTCCTGAAGCTGCAGAGTTCATAAATGAACATCTCTTCAATAATATGAAGAAATGTATTCCAGAAAATCGGGGAGTATCGGCCGAAATTATTAACAAAGCGTTCTTGGAGACCGAGGAGGAGTTTTTGTCTCTCGTAAAAAAGCAATGGCTTATTAAGCCGCAAATTGCTTCGGTTGGTTCGTGCTGTTTGGTAGGCATAATATGCTGTGGATTAATGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGATTCAAGCTGTTCAATTGTCAACTGAGCACAATGCAAGTATTGAATCTGTGAGGGAGGAGTTGCAGTCGTTGCATCCCGATGATCCTCAGATTGTGGTGTTAAAGCACAAGGTGTGGCGCGTGAAGGGTGTTATACAGGTCTCAAGAGCCATTGGTGATGCTTATCTGAAGAAAACCGAGTTCAACCGAGAGCCTCTTTTGCCGAAGTTCAGATTACCCGAACCATTCCACAAGCCAATACTTAAAGCCGAGCCTGATATCGTAGTTCGGGAACTGTACCCTGATGATCAGTTTCTTATATTTGCTTCAGATGGTTTGTGGGAGTATATAAGCAACCAGGAAGCTGTCGACATCGTCCAGAGTTGTCCTCGTAGTGGGATAGCAAAGAAACTTGTTCAAGCTGCTATTCATGAAGCTGCAAAAAAAAGAGAAATGAGATATGCAGACTTGAAGAAGATCGACCGCGGTGTAAGAAGACATTTTCACGACGATATCACTGTTATAGTTTTGTTCCTCGATTCGCATCTGATAAGTCGCAGTTCAAGCCATGGACCGTTGCTCTCGATCAGAGGAGGTTCTGGTATCCTCGCTAGATCATAG 1440 43.47 MWNITKRTSLRAAHQTPGQLKMEETLRNGISEYSNSKCRPISSVLKESNEKAIDASWVIFAERGLQNLSWQSVLKVFSTDSHQETQCFLIERLMLMVSETLMKIVSPCWKPSVEGETSSRGGDASGRVSGLLWYKDSGRHINGEFSMAVVQANNLLEDRSQLESGPLSSFESGPVGTFVGIYDGHGGPEAAEFINEHLFNNMKKCIPENRGVSAEIINKAFLETEEEFLSLVKKQWLIKPQIASVGSCCLVGIICCGLMYIANAGDSRVVLGRFEKTHKEIQAVQLSTEHNASIESVREELQSLHPDDPQIVVLKHKVWRVKGVIQVSRAIGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPDIVVRELYPDDQFLIFASDGLWEYISNQEAVDIVQSCPRSGIAKKLVQAAIHEAAKKREMRYADLKKIDRGVRRHFHDDITVIVLFLDSHLISRSSSHGPLLSIRGGSGILARS 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40031912 40036458 - Sed0016206.1 Sed07g2417 721281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2417 479 ProSiteProfiles PPM-type phosphatase domain profile. 144 452 IPR001932 -
Sed07g2417 479 Gene3D - 134 463 IPR036457 -
Sed07g2417 479 FunFam Phosphatase 2C family protein 133 462 - -
Sed07g2417 479 PANTHER PROTEIN PHOSPHATASE 137 451 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g2417 479 SUPERFAMILY PP2C-like 154 453 IPR036457 -
Sed07g2417 479 ProSitePatterns PPM-type phosphatase domain signature. 178 186 IPR000222 GO:0043169(InterPro)
Sed07g2417 479 Pfam Protein phosphatase 2C 176 421 IPR001932 -
Sed07g2417 479 CDD PP2Cc 145 452 IPR001932 -
Sed07g2417 479 SMART PP2C_4 136 450 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2734 Sed-Chr4:39568649 Sed07g2417 Sed-Chr7:40031912 2.20E-201 dispersed
Sed04g2735 Sed-Chr4:39568649 Sed07g2417 Sed-Chr7:40031912 2.40E-203 dispersed
Sed07g2417 Sed-Chr7:40031912 Sed10g1033 Sed-Chr10:9117671 6.50E-142 dispersed
Sed02g0716 Sed-Chr2:45005033 Sed07g2417 Sed-Chr7:40031912 4.70E-140 wgd
Sed04g2728 Sed-Chr4:39568291 Sed07g2417 Sed-Chr7:40031912 2.20E-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2417 K01102 - csv:101220760 702.205