Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2435 ATGATTCTCTCAGAGCCACCAAAGATCAACAACAAATTCCTGAACTTCAAAGAATTCTTCACCTTCTCCCACACATCTTCCTCCAAATCCCTCCATTCCGGCCGCCGGTCACCGCCGCCGGCGAGTTATGACACCACCGAATCCGCCGCCATGGAAGAGATAATCACAAACTCAGAACCCATCATCACAAAATGGGACCCGGACACGTCGGAGTTCAATCGCATCACCTTCCTCTTCCGCCACGGCCGGGAAGAATCCGGCGAGTTTTTGAACTCCGTCGACGAACTCCGGCGAGCAATGGACTTTTTCATATCGGAAAATTCCACCTCCGCCGTCCTCGTTCTCGCTCAAAAGCTAATGCAAGTCGCCATGAGACGACTCGAGAAGGAATTTTACCAGATTTTGAGTGAGAATCGCCGGAATCTCGACCCGGAATCCATCTCCGGCAGATCCTCCGACAATTCCACCGCCGACGAGGATACCGCCGGCATATTCGATAGAGTCTCGGCGGAGTTGAAATCGATTGCGGATTGCATGATTGATTCTGGGTATGGAAAAGAATGCGTTAAAATCTACAAAGTAATCCGAAAATCGATCGTCGATGAAACTCTGTTTCGGCTCGGAACAGAGAAGTTCAAAATCTCGAGAATACAGAGATGGAATTGGGATTCAATCGATAATATCATAAAGAATTGGATGAACACAGTAAAACTCGCCGTGAATACTCTGTTTCGTGGGGAGAAATTTCTCTGCGATCAAGTTTTTTTGAAATCGCCGAAAATCAGAGAATCCTGTTTTTCCGATATCACGAAAGACGCCGCAATAAGTTTGTTCAAATTCCCAGAATTAATCGCAAAAGGGAAAAAAGATCCAAACAAAATCTTTCTCTTAATGGATCTTTACGAAGCAAACTCCGACGTGTTGCCGGAAATCGAATCCATATTCGACTCTGTTTCGACAACCGCCGTGAAATCCCAAGCCGACATGTCGATGTCAAAGCTCGCCGATTCAATCCGCGACACTCTGCTTGAATTCGAGACGACAATTCAGAAAGATTCGTCGAAAACTCCGGCACCCGGCGGCGGAATCCACCCACTAACCCGATCGGCGATGAATTACATCTCATCGTTAGCAGAATACAGCGCAACCCTTTCGGAAATTCTCTCCGCCGGAAAAACCCAAATCCCGGCGTCGTACTTGGAAACAACCGCCGTCGCCGACGGTCTCCCGTCGGCCCCGGAACCGGCGGCGGCGGCGCAATTCGGGTGGCTGATTTTAGTCCTGCTCTGTAAACTGGACACAAAAGCAGAGCTGTACAAGGACGTATCGTTGTCGTATCTCTTCTTAGCGAACAACTTGAATTACATCGTGAGGACGGCGGCGGCGGCGGAGAGTCTGAGGACGGCGATGGGCGGCGAGTGGGCGGCGAGTCACCGGAGCAAGGTGAAGGCGTACGCGGCGAACTGCGAGGCGGCGGGGTGGGGCCGAGTGATGGCGGCGCTGCGGGAAAAGGGGTCGACGGCGGAGGAGGGGTTCAAGAAGTTCAACGAGGCGTTCGAGGAGGCGTACCGGAAAATGACGTCATGGAGGGTGGAGGAAGGGAAGCTTAGAGATGAGCTGAAAATGTCGATTGCGAAGAAATTGATGGCGGCGTATAAGGGGTTTTACGAGGGGAGCGTTGAGAAACTGGTGGCTGCGGAGAGAGCGGCTGTGGTGAGGTTTACGCCTGACGATTTGGGGAATTATTTGTCGGATTTATTTCATGGGGTTTCTTCTTCCGGGAGTAGCAGTTCTTCATCTTCTCTGTCTTCTTTTGGGAGTTTGTAA 1827 50.9 MILSEPPKINNKFLNFKEFFTFSHTSSSKSLHSGRRSPPPASYDTTESAAMEEIITNSEPIITKWDPDTSEFNRITFLFRHGREESGEFLNSVDELRRAMDFFISENSTSAVLVLAQKLMQVAMRRLEKEFYQILSENRRNLDPESISGRSSDNSTADEDTAGIFDRVSAELKSIADCMIDSGYGKECVKIYKVIRKSIVDETLFRLGTEKFKISRIQRWNWDSIDNIIKNWMNTVKLAVNTLFRGEKFLCDQVFLKSPKIRESCFSDITKDAAISLFKFPELIAKGKKDPNKIFLLMDLYEANSDVLPEIESIFDSVSTTAVKSQADMSMSKLADSIRDTLLEFETTIQKDSSKTPAPGGGIHPLTRSAMNYISSLAEYSATLSEILSAGKTQIPASYLETTAVADGLPSAPEPAAAAQFGWLILVLLCKLDTKAELYKDVSLSYLFLANNLNYIVRTAAAAESLRTAMGGEWAASHRSKVKAYAANCEAAGWGRVMAALREKGSTAEEGFKKFNEAFEEAYRKMTSWRVEEGKLRDELKMSIAKKLMAAYKGFYEGSVEKLVAAERAAVVRFTPDDLGNYLSDLFHGVSSSGSSSSSSSLSSFGSL 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40175971 40177852 + Sed0023594.1 Sed07g2435 721299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2435 608 SUPERFAMILY Cullin repeat-like 57 588 IPR016159 -
Sed07g2435 608 Pfam Exo70 exocyst complex subunit C-terminal 230 585 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed07g2435 608 PANTHER EXOCYST COMPLEX PROTEIN EXO70 53 589 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed07g2435 608 Gene3D Exocyst complex component Exo70 68 596 - -
Sed07g2435 608 Pfam Exocyst complex component Exo70 N-terminal 59 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2435 K07195 - - csv:101221801 827.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2435 Sed-Chr7:40175971 Sed13g1351 Sed-Chr13:19019674 2.80E-134 dispersed
Sed14g0449 Sed-Chr14:4538046 Sed07g2435 Sed-Chr7:40175971 8.50E-91 wgd
Sed02g0708 Sed-Chr2:44923836 Sed07g2435 Sed-Chr7:40175971 1.40E-123 wgd
Sed04g2787 Sed-Chr4:39935762 Sed07g2435 Sed-Chr7:40175971 8.60E-237 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g1977 . 10 651 EXO70 exocyst subunit family AT5G03540 75.6 1.1e-280 963.4
Sed07g2172 . 10 653 EXO70 exocyst subunit family AT5G03540 74.6 2.3e-278 955.7
Sed14g0271 . 40 675 EXO70 exocyst subunit family AT5G03540 68.7 1.6e-255 879.8
Sed14g0272 . 40 667 EXO70 exocyst subunit family AT5G03540 68.1 7.4e-253 870.9
Sed14g0274 . 1 561 EXO70 exocyst subunit family AT5G03540 68.0 3.2e-224 775.8
Sed14g0273 . 1 553 EXO70 exocyst subunit family AT5G03540 67.3 1.5e-221 766.9
Sed14g0271 . 40 675 EXO70 exocyst subunit family AT5G52340 77.5 4.1e-285 978.0
Sed14g0272 . 40 667 EXO70 exocyst subunit family AT5G52340 76.4 1.5e-279 959.5
Sed06g1977 . 12 651 EXO70 exocyst subunit family AT5G52340 72.7 1.9e-266 916.0
Sed07g2172 . 10 653 EXO70 exocyst subunit family AT5G52340 71.4 5.3e-261 897.9
Sed14g0274 . 1 561 EXO70 exocyst subunit family AT5G52340 77.4 1.3e-251 866.7
Sed14g0273 . 1 553 EXO70 exocyst subunit family AT5G52340 76.1 4.9e-246 848.2
Sed14g0271 . 184 671 EXO70 exocyst subunit family AT5G52350 61.5 9.3e-167 584.7
Sed14g0274 . 70 557 EXO70 exocyst subunit family AT5G52350 61.5 9.3e-167 584.7
Sed06g1977 . 147 651 EXO70 exocyst subunit family AT5G52350 57.9 5.3e-162 568.9
Sed14g0272 . 184 663 EXO70 exocyst subunit family AT5G52350 60.2 1.5e-161 567.4
Sed14g0273 . 70 549 EXO70 exocyst subunit family AT5G52350 60.2 1.5e-161 567.4
Sed07g2172 . 147 653 EXO70 exocyst subunit family AT5G52350 57.9 5.8e-161 565.5
Sed01g1201 . 1 627 EXO70 exocyst subunit family AT5G58430 65.5 5.0e-243 838.2
Sed01g1201 . 1 626 EXO70 exocyst subunit family AT1G07000 52.1 1.3e-171 600.9
Sed02g1010 . 63 671 EXO70 exocyst subunit family AT5G13150 50.9 1.1e-163 574.7
Sed03g0894 . 9 512 EXO70 exocyst subunit family AT5G13150 52.1 4.7e-151 532.7
Sed01g2974 . 83 661 EXO70 exocyst subunit family AT5G13990 51.9 3.8e-175 612.8
Sed03g0894 . 5 507 EXO70 exocyst subunit family AT5G13990 55.2 1.3e-164 577.8
Sed06g0018 . 9 610 EXO70 exocyst subunit family AT1G72470 63.6 2.5e-210 729.6
Sed06g2306 . 10 611 EXO70 exocyst subunit family AT1G72470 59.9 1.5e-194 677.2
Sed06g0018 . 9 608 EXO70 exocyst subunit family AT1G54090 60.5 2.9e-203 706.1
Sed06g2306 . 3 609 EXO70 exocyst subunit family AT1G54090 58.7 1.0e-195 681.0
Sed06g0018 . 1 609 EXO70 exocyst subunit family AT3G14090 62.3 1.1e-213 740.7
Sed06g2306 . 10 610 EXO70 exocyst subunit family AT3G14090 60.6 1.7e-203 706.8
Sed08g2438 . 21 660 EXO70 exocyst subunit family AT5G50380 62.9 1.4e-227 786.9
Sed01g1563 . 17 654 EXO70 exocyst subunit family AT5G50380 61.8 5.3e-222 768.5
Sed08g0032 . 14 650 EXO70 exocyst subunit family AT5G50380 60.6 3.0e-217 752.7
Sed12g2505 . 10 634 EXO70 exocyst subunit family AT5G50380 58.6 1.8e-209 726.9
Sed01g1298 . 1 671 EXO70 exocyst subunit family AT4G31540 73.4 2.2e-292 1002.3
Sed03g1531 . 13 679 EXO70 exocyst subunit family AT4G31540 72.6 3.5e-290 995.0
Sed07g2435 . 45 589 EXO70 exocyst subunit family AT2G39380 50.1 1.3e-142 504.6
Sed02g0708 . 34 628 EXO70 exocyst subunit family AT3G09520 54.5 1.1e-173 607.8
Sed04g1299 . 35 635 EXO70 exocyst subunit family AT3G09520 53.3 2.5e-170 596.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36