Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2435 ATGATTCTCTCAGAGCCACCAAAGATCAACAACAAATTCCTGAACTTCAAAGAATTCTTCACCTTCTCCCACACATCTTCCTCCAAATCCCTCCATTCCGGCCGCCGGTCACCGCCGCCGGCGAGTTATGACACCACCGAATCCGCCGCCATGGAAGAGATAATCACAAACTCAGAACCCATCATCACAAAATGGGACCCGGACACGTCGGAGTTCAATCGCATCACCTTCCTCTTCCGCCACGGCCGGGAAGAATCCGGCGAGTTTTTGAACTCCGTCGACGAACTCCGGCGAGCAATGGACTTTTTCATATCGGAAAATTCCACCTCCGCCGTCCTCGTTCTCGCTCAAAAGCTAATGCAAGTCGCCATGAGACGACTCGAGAAGGAATTTTACCAGATTTTGAGTGAGAATCGCCGGAATCTCGACCCGGAATCCATCTCCGGCAGATCCTCCGACAATTCCACCGCCGACGAGGATACCGCCGGCATATTCGATAGAGTCTCGGCGGAGTTGAAATCGATTGCGGATTGCATGATTGATTCTGGGTATGGAAAAGAATGCGTTAAAATCTACAAAGTAATCCGAAAATCGATCGTCGATGAAACTCTGTTTCGGCTCGGAACAGAGAAGTTCAAAATCTCGAGAATACAGAGATGGAATTGGGATTCAATCGATAATATCATAAAGAATTGGATGAACACAGTAAAACTCGCCGTGAATACTCTGTTTCGTGGGGAGAAATTTCTCTGCGATCAAGTTTTTTTGAAATCGCCGAAAATCAGAGAATCCTGTTTTTCCGATATCACGAAAGACGCCGCAATAAGTTTGTTCAAATTCCCAGAATTAATCGCAAAAGGGAAAAAAGATCCAAACAAAATCTTTCTCTTAATGGATCTTTACGAAGCAAACTCCGACGTGTTGCCGGAAATCGAATCCATATTCGACTCTGTTTCGACAACCGCCGTGAAATCCCAAGCCGACATGTCGATGTCAAAGCTCGCCGATTCAATCCGCGACACTCTGCTTGAATTCGAGACGACAATTCAGAAAGATTCGTCGAAAACTCCGGCACCCGGCGGCGGAATCCACCCACTAACCCGATCGGCGATGAATTACATCTCATCGTTAGCAGAATACAGCGCAACCCTTTCGGAAATTCTCTCCGCCGGAAAAACCCAAATCCCGGCGTCGTACTTGGAAACAACCGCCGTCGCCGACGGTCTCCCGTCGGCCCCGGAACCGGCGGCGGCGGCGCAATTCGGGTGGCTGATTTTAGTCCTGCTCTGTAAACTGGACACAAAAGCAGAGCTGTACAAGGACGTATCGTTGTCGTATCTCTTCTTAGCGAACAACTTGAATTACATCGTGAGGACGGCGGCGGCGGCGGAGAGTCTGAGGACGGCGATGGGCGGCGAGTGGGCGGCGAGTCACCGGAGCAAGGTGAAGGCGTACGCGGCGAACTGCGAGGCGGCGGGGTGGGGCCGAGTGATGGCGGCGCTGCGGGAAAAGGGGTCGACGGCGGAGGAGGGGTTCAAGAAGTTCAACGAGGCGTTCGAGGAGGCGTACCGGAAAATGACGTCATGGAGGGTGGAGGAAGGGAAGCTTAGAGATGAGCTGAAAATGTCGATTGCGAAGAAATTGATGGCGGCGTATAAGGGGTTTTACGAGGGGAGCGTTGAGAAACTGGTGGCTGCGGAGAGAGCGGCTGTGGTGAGGTTTACGCCTGACGATTTGGGGAATTATTTGTCGGATTTATTTCATGGGGTTTCTTCTTCCGGGAGTAGCAGTTCTTCATCTTCTCTGTCTTCTTTTGGGAGTTTGTAA 1827 50.9 MILSEPPKINNKFLNFKEFFTFSHTSSSKSLHSGRRSPPPASYDTTESAAMEEIITNSEPIITKWDPDTSEFNRITFLFRHGREESGEFLNSVDELRRAMDFFISENSTSAVLVLAQKLMQVAMRRLEKEFYQILSENRRNLDPESISGRSSDNSTADEDTAGIFDRVSAELKSIADCMIDSGYGKECVKIYKVIRKSIVDETLFRLGTEKFKISRIQRWNWDSIDNIIKNWMNTVKLAVNTLFRGEKFLCDQVFLKSPKIRESCFSDITKDAAISLFKFPELIAKGKKDPNKIFLLMDLYEANSDVLPEIESIFDSVSTTAVKSQADMSMSKLADSIRDTLLEFETTIQKDSSKTPAPGGGIHPLTRSAMNYISSLAEYSATLSEILSAGKTQIPASYLETTAVADGLPSAPEPAAAAQFGWLILVLLCKLDTKAELYKDVSLSYLFLANNLNYIVRTAAAAESLRTAMGGEWAASHRSKVKAYAANCEAAGWGRVMAALREKGSTAEEGFKKFNEAFEEAYRKMTSWRVEEGKLRDELKMSIAKKLMAAYKGFYEGSVEKLVAAERAAVVRFTPDDLGNYLSDLFHGVSSSGSSSSSSSLSSFGSL 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40175971 40177852 + Sed0023594.1 Sed07g2435 721299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2435 608 SUPERFAMILY Cullin repeat-like 57 588 IPR016159 -
Sed07g2435 608 Pfam Exo70 exocyst complex subunit C-terminal 230 585 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed07g2435 608 PANTHER EXOCYST COMPLEX PROTEIN EXO70 53 589 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed07g2435 608 Gene3D Exocyst complex component Exo70 68 596 - -
Sed07g2435 608 Pfam Exocyst complex component Exo70 N-terminal 59 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2435 Sed-Chr7:40175971 Sed13g1351 Sed-Chr13:19019674 2.80E-134 dispersed
Sed14g0449 Sed-Chr14:4538046 Sed07g2435 Sed-Chr7:40175971 8.50E-91 wgd
Sed02g0708 Sed-Chr2:44923836 Sed07g2435 Sed-Chr7:40175971 1.40E-123 wgd
Sed04g2787 Sed-Chr4:39935762 Sed07g2435 Sed-Chr7:40175971 8.60E-237 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2435 K07195 - csv:101221801 827.394