Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2453 ATGGTGGGCACTGAGGAGGATTCTGGTACTTCTGGGTCTGCAGTGCAGCTTTCTGGGGGAGGTCGGAAATTGTTCTGGCGCTCGGCCTCGTGGTCTGCGTCGCGTTCGTCCCTTCACCATCCTGAAGTGAACAAAGATGGTGGAGACCCCAATGGGAGTCTTGGTGATAGTAATGGACCGAGCCGAATCTACCCTGCTCCTCCGTTAACTCCAAGGTCACAGCAGCATTGCAAGGCAAGGTCGTGTTTGCCCCCTTTACAGCCTCTCTCGATAGCCCGCCGAAGCTTGGATGAATGGCCGAAGGCGGGATCGGATGATATAGGCGAATGGCCGCAACCTCCTACTCCAAGTGGTAGAGGAAATGGGGAGAGGTTGAAACTTGATTTGTCGACGATTCAGAGAGTCCCGGATAAGAATTGTGGGCTTGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAAAGTGTTCAAAAGTGGCGGAACATGTATATCTTGGTGGAGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATAACTCATGTGTTGAACTGTGTAGGTTTTGTTTGCCCAGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTTTATGATGTTTTTGACTATTTTGAAGACGTTAGAGAGCAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCTCGGTCAACATCCTTGGTGATTGCTTATCAGATGTGGAGAGAAGGACAGAGTTTTGATGATGCATTTCAATATGTGAAGGCAGCAAGAGGTATAGCTGACCCAAATATGGGATTTGCTTGCCAGTTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCTAGTTCACTGTTGAGGATGTATCGAGTTGCTCCGCACTCACCTTATGATCCCTTGCATTTGGTCCCTAAAATGTTGAATGATCCTTCACCCTCTGCTCTGGATTCTAGAGGAGCCTTTATCATTCATATACCTTCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGGGATGCGAGGGGAGCTGTTGTACAGATTGTTCGATACGAGAGAGTGCAAGGTCCTATATATGTAATTAAGGAAGGGGAAGAACCAGGAAACTTTTGGGATTCTTTTGCAAACCTGTTACCTTTAATGTATAAATCCAATAGTAAAATCAATCTGGGGGAATCGAAAGGTAAGCCTTATCCAGGGGAGAGGAAAGTTGATTCCTATAATGTGGATTTTGAAATTTTCCAGAAGGCTATTACTGGTGGTTTTGTTCCCCCGTTTCCTTCATCTGAGAACAAGCACGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTATGCTTAGGCGTAAGTTTGCCTCTGGGAATATGAAAGATTTTGTATCAGCTCCTCGAATATCGCTCTCTAGGGCTTATTCAGACTCTTTGATGATGGTGCATTTTTCTTCCAAATCTTCATCGCCTTCGGCATTTTCACTGTCTTCATCATCTTCTTCACCTATCTATCTTTCTCCTGATTCCCTTTCATCTGATTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCTTCTGCATCTTCACCTCGAGTTCCAGTTTCTTCCTCTCTGTCTAGCTTTTCTAACATGACTCTTATCTCATCCAATAGTTCCTTAGAAACGGCGCCCCATGGTCCAGAAACTCGTGATGCAGTTCCTTTGGAATCAAGTTCTCACCCCTTCTCATTCCCCTCCAAAAAGTTTTCACCTTCTCTTGCAGAACGCCGAGGTAGTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAGAGCAACAAATAGTGCTTCAAGGTTTCTTTCCACTCAAGAAGATGGTAAGAGGAAGAACAATATTTCTTGCTCTCTTAATGTATCAGTTAACACAAAAAATGGCTCAGAGCCTATAGATAGTAGGGTTGTAAATGAATATACAAGTTCCACTCAGAATTTCAAGAATATTGATAATGTAATGGGTGTGAGTATAGGCAGTGAGGTGTTGTGTGAGCAGGAAACTAAAGTTGATGGACAATCTACTACTAGTTCATGGAAAAGCTACCCCAAAATTTTTGAAGAAGGCATGGTATCCACTGTGTCAAATGGGAAGCAAGATGACGAATTTGTCCAACCTATGGCGTATTGTTGGCCGGAGTTAGAAAAGATTACAGCTTTTGACACAAGTTGCCTCAATTCTAAAGCTGCTATGGTGGTTTTCTCTCCAAGTAGGTATTTGGGCAAGAAGGATGACATGAGGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTATATCAGGTTCAAGTAAAGAGGGATAAAGAGTTGGTAGATTTAGAAAAGATAGACTGGGTTAAAGTTGGACAATATGTACTTACTGAAATAGGCCTGCCAGAAAACACAGAAATTAAGATCGTCAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCGCGATTGAGTCTGTTGTAG 2568 42.8 MVGTEEDSGTSGSAVQLSGGGRKLFWRSASWSASRSSLHHPEVNKDGGDPNGSLGDSNGPSRIYPAPPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRVPDKNCGLVKRDKIAFFDKKCSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYQMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPGNFWDSFANLLPLMYKSNSKINLGESKGKPYPGERKVDSYNVDFEIFQKAITGGFVPPFPSSENKHETHLPVRESSWSMLRRKFASGNMKDFVSAPRISLSRAYSDSLMMVHFSSKSSSPSAFSLSSSSSSPIYLSPDSLSSDSSSSSSSKYFSESSLDSPSASSPRVPVSSSLSSFSNMTLISSNSSLETAPHGPETRDAVPLESSSHPFSFPSKKFSPSLAERRGSAKSLTLPTMPSKIRATNSASRFLSTQEDGKRKNNISCSLNVSVNTKNGSEPIDSRVVNEYTSSTQNFKNIDNVMGVSIGSEVLCEQETKVDGQSTTSSWKSYPKIFEEGMVSTVSNGKQDDEFVQPMAYCWPELEKITAFDTSCLNSKAAMVVFSPSRYLGKKDDMRLYIWVGSSFDHDLYQVQVKRDKELVDLEKIDWVKVGQYVLTEIGLPENTEIKIVKEGEETEEFLARLSLL 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40280447 40285913 + Sed0015325.1 Sed07g2453 721317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2453 855 ProSiteProfiles Dual specificity protein phosphatase domain profile. 154 296 IPR020422 GO:0006470(InterPro)
Sed07g2453 855 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 295 IPR029021 -
Sed07g2453 855 MobiDBLite consensus disorder prediction 577 624 - -
Sed07g2453 855 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 213 274 IPR000387 GO:0016311(InterPro)
Sed07g2453 855 ProSitePatterns Tyrosine specific protein phosphatases active site. 238 248 IPR016130 GO:0016311(InterPro)
Sed07g2453 855 MobiDBLite consensus disorder prediction 30 78 - -
Sed07g2453 855 Pfam Dual specificity phosphatase, catalytic domain 162 292 IPR000340 GO:0016311(InterPro)
Sed07g2453 855 SMART VILL_6 303 400 IPR007122 GO:0051015(InterPro)
Sed07g2453 855 SUPERFAMILY Actin depolymerizing proteins 756 852 - -
Sed07g2453 855 CDD DSP 155 289 - -
Sed07g2453 855 PANTHER MKPA PROTEIN 13 850 - -
Sed07g2453 855 SUPERFAMILY Actin depolymerizing proteins 301 405 - -
Sed07g2453 855 SMART dsp_5 154 293 IPR020422 GO:0006470(InterPro)
Sed07g2453 855 Gene3D Severin 305 400 IPR029006 -
Sed07g2453 855 Gene3D Protein tyrosine phosphatase superfamily 142 296 IPR029021 -
Sed07g2453 855 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0575 Sed-Chr4:4402504 Sed07g2453 Sed-Chr7:40280447 1.60E-154 dispersed
Sed04g2799 Sed-Chr4:40003050 Sed07g2453 Sed-Chr7:40280447 0.00E+00 dispersed
Sed04g2798 Sed-Chr4:40003050 Sed07g2453 Sed-Chr7:40280447 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2453 - - - 0.0