Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2469 ATGGAGGGTTTTGTGAGGCTTTTGGGTTTGGCAAAGCCATATGCGGTGGTTGTTTTTGTGCAGTTTGGTTATGCTGGAATGGCCATTCTTGTCAAGTCTGCTTTGGACAAGGGGATGAGCCAACATGTTTTCGTGGCTTATCGTCATGCCATTGCTACCATCGTCGTTGCACCTTTTGCCCTTGTGTTCGACAGGAAGGCGAGGACAAAGATGACATTTTCAATATTCTGGAAGATTGTGATGCTGGGTTTATTAGAGCCAGTGATCGATCAGAACTTGTATTTTACTGGTATGAAGCTCACAACAGCAACCTTCACAGCAGCAATGTGCAATATTCTACCAGCTTTTTCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAAAAGGTGAATTTTTTGAAAAGAGGAAGCCAAGCAAAAATGTTAGGAACCATAGTGACAGTTGGAGGAGCCATGATTATGACCTTCATAACTGGACCAATGCTGAATCTACCATGGACCAAACCCAACCATGACTCTGCTTCTTTAGGTGGCTCTGCAAATCACCAAAGCCCACTCAAGGGTTCATTCATGATTGTAATTGGCTGCATTTGTTGGTCAGCTTTCATCACTCTTCAGGCGATTACGTTGAAGGCGTACCCGGCAGAGTTGTCGCTTACGGCATTGATATGCTTGGTGGGCACCATTGGAGGCTCTGGGGTGGCTTTGGTCATGGAGAGGGGCAACCCTGCTGCTTGGGCGTTGCACTTTGATACTCAGCTTTTAACTGTTGCTTATTCAGGAATAATATGTTCAGGAGTAACTTATTACATTCAAGGAGTGGTGATGCAAACAAAAGGACCTGTTTTTGTAACAGCATTCAGTCCTCTAAGCATGATTCTTGTTGCAATCATGAGTTCCTTCCTCTTGTCTGAGATAATGTTCTTGGGAAGGGTTATTGGAGCAGTGGCCATAATCACTGGTTTGTACCTTGTTTTGTGGGGCAAAAGCAAGGATCAGAATTCGGTTAAATCGGACTGTGATAAAATAACACCTTGTGAGCAACAAATGACCGGAAAGGATGAGGTTTCGACAACAATTTCGAATGAAGAATTTGTGGCGATTGAGGTTGCAAAAGAGGGGACAAATTGA 1128 44.24 MEGFVRLLGLAKPYAVVVFVQFGYAGMAILVKSALDKGMSQHVFVAYRHAIATIVVAPFALVFDRKARTKMTFSIFWKIVMLGLLEPVIDQNLYFTGMKLTTATFTAAMCNILPAFSFLMAWACRLEKVNFLKRGSQAKMLGTIVTVGGAMIMTFITGPMLNLPWTKPNHDSASLGGSANHQSPLKGSFMIVIGCICWSAFITLQAITLKAYPAELSLTALICLVGTIGGSGVALVMERGNPAAWALHFDTQLLTVAYSGIICSGVTYYIQGVVMQTKGPVFVTAFSPLSMILVAIMSSFLLSEIMFLGRVIGAVAIITGLYLVLWGKSKDQNSVKSDCDKITPCEQQMTGKDEVSTTISNEEFVAIEVAKEGTN 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40415188 40419184 - Sed0023184.1 Sed07g2469 721333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2469 375 PANTHER WAT1-RELATED PROTEIN 16 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed07g2469 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 330 - -
Sed07g2469 375 Pfam EamA-like transporter family 16 153 IPR000620 GO:0016020(InterPro)
Sed07g2469 375 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020(InterPro)
Sed07g2469 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0062 Sed-Chr3:378573 Sed07g2469 Sed-Chr7:40415188 1.70E-111 dispersed
Sed03g0063 Sed-Chr3:407753 Sed07g2469 Sed-Chr7:40415188 4.20E-101 dispersed
Sed04g2820 Sed-Chr4:40128616 Sed07g2469 Sed-Chr7:40415188 5.60E-157 dispersed
Sed04g2821 Sed-Chr4:40145493 Sed07g2469 Sed-Chr7:40415188 3.40E-162 dispersed
Sed07g2469 Sed-Chr7:40415188 Sed07g2471 Sed-Chr7:40463867 2.10E-143 dispersed
Sed07g2468 Sed-Chr7:40394864 Sed07g2469 Sed-Chr7:40415188 2.10E-126 tandem
Sed07g2469 Sed-Chr7:40415188 Sed07g2470 Sed-Chr7:40424624 1.80E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2469 - - - 0.0