Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2471 ATGAAGGATTTTGTGAGGCTTTTTGGTTTGGCAAAGCCATATTTGGCAGTTATTTTTCTTCAATTTGGCTATGCTGGGTTGGCCATTCTTGCAAAGTCAGCCATGAATAAAGGGATGAGCGTACATGTTTTTGCGGTTTATCGTCAAGTCGTTGCTACTCTTGTTATGACTTTTATTGCCCTAATCTTCGAAAGGAAAGGGAGGCCGAAGATGACCTATTCTGTGTTGTTGAAGATTGTGGTACTAGGTTTCTTGGAGCCAGTTATTGATCAGAACTTGTACTATGGTGGTATGAAGTTCACAACAGCAACTTTTACAATTGCATTGAGCAATGTTCTACCAGCTTTTGTTTTCCTCATGGCTTGGTTTTTCAGGCTTGAGAAAGTGAATATTTTGAAAAGGGAAAGCCAAGCAAAAATCCTAGGAACCATTATAACAATTGGAGGAGCCATGATTATGACCTTCATAAGTGGACCCAAATTGAATTTACCATGGACCAATACCAACCATCACTCTGTTTCTAATTCAAATGGTTCTATGAATCCTCTCACCCAACTCAAGGGCTCCCTCATGATTACAACTGGCTGCCTTTCATGGGCAGCCTTTATCATTCTTCAGGCGATTACGTTGAAATCGTACTCGGCGGAGTTGTCGCTTACGGCATTGATATGCTTGGTGGGCGGCATTGGAGACTTAGGGGTGGCTTTGATCATTGAAAGGGGAAACCCCACTGCTTGGTCTTTGCACTTTGACACTCAACTTCTAGCTATTGTTTATGCTGGAATAATATGTACAGGACTAGCTTATTATATTCAAGGAGTGGTGCTACAAGCAAAAGGGCCTGTTTTTTTCACAGCATTCAATCCTCTGTGCATGATTCTAACTGCAATCATGAGCTCCTTTATATTGTCTGAGATAATGGTTTTGGGCAGAGTTATTGGAGCAGGTGTCATAATCATTGGCTTGTACCTTGTTTTGTGGGGCAAAAGCAAAGATCAAATTTCAATTAAATCAGAGTGTGATAAGATAACACATTATGAGCAACAAATGACTGGAAACAATGAGGCTTCCAAGACTGTTCAATCAAATGAACAATGTGTTGTGCTTGATGTTGCCAAATAG 1122 40.55 MKDFVRLFGLAKPYLAVIFLQFGYAGLAILAKSAMNKGMSVHVFAVYRQVVATLVMTFIALIFERKGRPKMTYSVLLKIVVLGFLEPVIDQNLYYGGMKFTTATFTIALSNVLPAFVFLMAWFFRLEKVNILKRESQAKILGTIITIGGAMIMTFISGPKLNLPWTNTNHHSVSNSNGSMNPLTQLKGSLMITTGCLSWAAFIILQAITLKSYSAELSLTALICLVGGIGDLGVALIIERGNPTAWSLHFDTQLLAIVYAGIICTGLAYYIQGVVLQAKGPVFFTAFNPLCMILTAIMSSFILSEIMVLGRVIGAGVIIIGLYLVLWGKSKDQISIKSECDKITHYEQQMTGNNEASKTVQSNEQCVVLDVAK 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40463867 40470671 - Sed0002086.1 Sed07g2471 721335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2471 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 156 - -
Sed07g2471 373 PANTHER WAT1-RELATED PROTEIN 15 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed07g2471 373 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020(InterPro)
Sed07g2471 373 Pfam EamA-like transporter family 14 154 IPR000620 GO:0016020(InterPro)
Sed07g2471 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2468 Sed-Chr7:40394864 Sed07g2471 Sed-Chr7:40463867 2.40E-130 dispersed
Sed07g2469 Sed-Chr7:40415188 Sed07g2471 Sed-Chr7:40463867 2.10E-143 dispersed
Sed07g2471 Sed-Chr7:40463867 Sed14g0458 Sed-Chr14:4628729 3.40E-98 dispersed
Sed07g2470 Sed-Chr7:40424624 Sed07g2471 Sed-Chr7:40463867 3.00E-155 tandem
Sed07g2471 Sed-Chr7:40463867 Sed07g2472 Sed-Chr7:40463867 5.60E-149 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2471 - - - 0.0