Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2481 ATGGCAGATTCTGAGGATATTCAGCCTCTCGTATGCGATAATGGAACGGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGAGCCGTGTTTCCTAGTATCGTAGGTCGTCCTCGCCACACTGGTGTGATGGTTGGCATGGGTCAGAAAGATGCTTATGTTGGTGATGAAGCTCAATCCAAGCGTGGTATTTTAACTCTGAAGTACCCAATTGAGCATGGTATTGTTAGTAACTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAACGAGCTTCGTGTTGCCCCCGAGGAACACCCGGTTCTCCTAACTGAGGCTCCTCTCAATCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACCTTCAATACTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACTACTGGTATTGTGATGGACTCTGGTGATGGTGTCAGTCATACTGTCCCTATCTACGAAGGGTATGCCCTCCCACACGCCATCCTTCGTCTTGACCTGGCAGGACGCGATCTCACAGATGGCCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACAACTGCTGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTCGCATATATTGCCCTTGATTATGAACAGGAGATGGAGACATCCAAGACCAGCTCGTCGGTCGAAAAGAGCTACGAATTGCCTGATGGACAGGTGATCACCATTGGTGCAGAGAGATTCCGATGCCCCGAAGTTCTTTTCCAACCTTCCATGATAGGAATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCCATCATGAAGTGTGATGTGGATATCAGGAAGGACCTGTATGGCAACATTGTCCTGTCTGGTGGTTCGACCATGTTCCCCGGAATTGCTGATAGGATGAGCAAGGAAATCTCCGCCCTCGCCCCTAGCAGCATGAAGATAAAGGTCGTGGCGCCACCGGAGAGAAAGTACAGTGTCTGGATTGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCGAAGGCAGAGTACGACGAATCTGGACCGTCGATCGTGCACAGGAAATGCTTCTAA 1134 48.77 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40527906 40530781 - Sed0009665.1 Sed07g2481 721345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2481 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Sed07g2481 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Sed07g2481 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sed07g2481 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Sed07g2481 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sed07g2481 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Sed07g2481 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Sed07g2481 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sed07g2481 377 FunFam Actin, alpha skeletal muscle 3 155 - -
Sed07g2481 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Sed07g2481 377 Pfam Actin 5 377 IPR004000 -
Sed07g2481 377 PRINTS Actin signature 51 62 IPR004000 -
Sed07g2481 377 PRINTS Actin signature 238 254 IPR004000 -
Sed07g2481 377 PRINTS Actin signature 63 85 IPR004000 -
Sed07g2481 377 PRINTS Actin signature 28 37 IPR004000 -
Sed07g2481 377 PRINTS Actin signature 117 130 IPR004000 -
Sed07g2481 377 PRINTS Actin signature 142 161 IPR004000 -
Sed07g2481 377 Gene3D - 10 371 - -
Sed07g2481 377 FunFam Actin, muscle 182 273 - -
Sed07g2481 377 SMART actin_3 7 377 IPR004000 -
Sed07g2481 377 Gene3D - 140 340 - -
Sed07g2481 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2744 Sed-Chr1:22170118 Sed07g2481 Sed-Chr7:40527906 7.00E-216 dispersed
Sed03g0086 Sed-Chr3:531191 Sed07g2481 Sed-Chr7:40527906 2.00E-215 dispersed
Sed07g2481 Sed-Chr7:40527906 Sed12g1245 Sed-Chr12:8902651 3.50E-215 dispersed
Sed07g2481 Sed-Chr7:40527906 Sed07g2482 Sed-Chr7:40527906 5.10E-219 tandem
Sed14g0482 Sed-Chr14:4810504 Sed07g2481 Sed-Chr7:40527906 9.60E-70 wgd
Sed04g2828 Sed-Chr4:40190587 Sed07g2481 Sed-Chr7:40527906 1.50E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2481 K10355 - csv:101220611 748.043