Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2495 ATGGCCGCCATTTCCATTCCTCTTCTCCTCTTTCTCCTCTCGCCCCTCGCCGCCGTCCACGCCAGGATCCCCGGAGTTTTCACCGCCGGCCAGTGGGAGACCGCTCATGCTACCTTTTACGGCGGCAGTGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTGTACAGCCAAGGCTATGGAGTAAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGGCTTAAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCGCAAACGATCCGCAGTGGTGCCATTCCGGCAGCCCGTCCATCTTGATCACTGCCACAAACTTTTGCCCTCCGAACTTCGCCCAACCGAGCGACAATGGAGGCTGGTGCAACCCTCCCCGGCCGCATTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCTGAGTACAGAGCCGGAATTGTTCCAGTCTCCTATCGCAGGGTGCCATGCCGGAAACAGGGAGGAATCAGGTTCACAATCAACGGGTTCCGATACTTCAACTTGGTGCTGATCACGAACGTGGCAGGCGCGGGAGACATAGTGAAGGCGAGCGTGAAGGGCAGCAAAACAGAGTGGATGAGCATGAGCCGGAACTGGGGTCAGAACTGGCAATCAAACGCCATCTTGGTTGGTCAGTCGCTGTCGTTCAGGGTCACAGCCAGTGATCGCCGCACCACCACTTCCTGGAACATCGCCCCCTCCAGTTGGCAATTCGGCCAGACTTTCACAGGCAAGAATTTCAGAGTCTAA 777 57.53 MAAISIPLLLFLLSPLAAVHARIPGVFTAGQWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAILVGQSLSFRVTASDRRTTTSWNIAPSSWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40621356 40624452 - Sed0001547.1 Sed07g2495 721359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2495 258 FunFam Expansin 164 256 - -
Sed07g2495 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Sed07g2495 258 CDD DPBB_EXPA_N 31 159 - -
Sed07g2495 258 Gene3D - 164 256 IPR036749 -
Sed07g2495 258 Gene3D - 19 160 IPR036908 -
Sed07g2495 258 SMART dpbb_1 67 154 IPR007112 -
Sed07g2495 258 FunFam Expansin 21 160 - -
Sed07g2495 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Sed07g2495 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Sed07g2495 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Sed07g2495 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Sed07g2495 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Sed07g2495 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Sed07g2495 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Sed07g2495 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 PANTHER EXPANSIN-A15 19 256 IPR002963 GO:0009664(InterPro)
Sed07g2495 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Sed07g2495 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Sed07g2495 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Sed07g2495 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1092 Sed-Chr1:8212684 Sed07g2495 Sed-Chr7:40621356 1.20E-124 dispersed
Sed05g0853 Sed-Chr5:6796719 Sed07g2495 Sed-Chr7:40621356 3.20E-68 dispersed
Sed06g1474 Sed-Chr6:39493423 Sed07g2495 Sed-Chr7:40621356 2.80E-78 dispersed
Sed07g2495 Sed-Chr7:40621356 Sed11g2112 Sed-Chr11:35050955 1.30E-99 dispersed
Sed03g1296 Sed-Chr3:8275874 Sed07g2495 Sed-Chr7:40621356 3.10E-77 transposed
Sed13g1396 Sed-Chr13:19376925 Sed07g2495 Sed-Chr7:40621356 4.20E-127 wgd
Sed14g0493 Sed-Chr14:4867194 Sed07g2495 Sed-Chr7:40621356 3.20E-127 wgd
Sed03g0096 Sed-Chr3:584840 Sed07g2495 Sed-Chr7:40621356 3.60E-118 wgd
Sed04g2835 Sed-Chr4:40265268 Sed07g2495 Sed-Chr7:40621356 2.00E-134 wgd
Sed05g2978 Sed-Chr5:40441191 Sed07g2495 Sed-Chr7:40621356 9.00E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2495 - - - 0.0