Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2503 ATGACAGGGCTTACCCCTTCTTCTTGTGGTGCTTGCAAGTTTCTTAGGAGAAAATGTAGCAATCAATGTGTTTTTGCTCCTTTCTTCAGCTATGATGAAGCTACTTCCCATTTTTCTGCTGTTCATAAGGTCTTTGGTGCTAGTAATGTCTCCAAGCTTCTCCTACACCTCCCCGAACACATCCGTAGCCATGCTGCGATGACTGTCGCTTATGAAGCTCTCGAGCGCATGCGAGATCCCACCTATGGCTGTATCGCGCATATCTTTGCACTGCAGCAAGAGATCGCAAGCTTGCAAGAAGAGATAGAAATTCTAGGGAGCCAAATAACCAACTTCACGGTCGGTAACGGCGGTGTTGCGACGGTCGAGATTCCTTTCATAGAGCTTCAAGTTTCGAACCAGCAGAATGATTTGGCGATGAACACAAACGATAATCAAAACGAGTTGCTTTCTCAGATGTCACACCAAACTTTTGAACAAGTCCAAAATGATGTTGAAATGATATCTCCAATGTTTTTCTTTGAGGAAGAAGAAGGGTTTATTGGGTACAATCCAAATAATATTATGGAAAGATCAGCCTTTGATGTTTCATTTGAGGAAAGTTTTGCTTATCCACGGTAA 621 42.83 MTGLTPSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFSAVHKVFGASNVSKLLLHLPEHIRSHAAMTVAYEALERMRDPTYGCIAHIFALQQEIASLQEEIEILGSQITNFTVGNGGVATVEIPFIELQVSNQQNDLAMNTNDNQNELLSQMSHQTFEQVQNDVEMISPMFFFEEEEGFIGYNPNNIMERSAFDVSFEESFAYPR 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40762582 40764454 + Sed0003059.1 Sed07g2503 721367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2503 206 Coils Coil 88 108 - -
Sed07g2503 206 PANTHER LOB DOMAIN CONTAINING PROTEIN 3 160 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Sed07g2503 206 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Sed07g2503 206 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2503 Sed-Chr7:40762582 Sed09g0109 Sed-Chr9:822546 4.00E-32 dispersed
Sed07g2503 Sed-Chr7:40762582 Sed02g1589 Sed-Chr2:51458567 1.80E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39192 PF03195 LOB 3.60E-33 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2503 K13945 - csv:101204875 279.256