Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2503 | ATGACAGGGCTTACCCCTTCTTCTTGTGGTGCTTGCAAGTTTCTTAGGAGAAAATGTAGCAATCAATGTGTTTTTGCTCCTTTCTTCAGCTATGATGAAGCTACTTCCCATTTTTCTGCTGTTCATAAGGTCTTTGGTGCTAGTAATGTCTCCAAGCTTCTCCTACACCTCCCCGAACACATCCGTAGCCATGCTGCGATGACTGTCGCTTATGAAGCTCTCGAGCGCATGCGAGATCCCACCTATGGCTGTATCGCGCATATCTTTGCACTGCAGCAAGAGATCGCAAGCTTGCAAGAAGAGATAGAAATTCTAGGGAGCCAAATAACCAACTTCACGGTCGGTAACGGCGGTGTTGCGACGGTCGAGATTCCTTTCATAGAGCTTCAAGTTTCGAACCAGCAGAATGATTTGGCGATGAACACAAACGATAATCAAAACGAGTTGCTTTCTCAGATGTCACACCAAACTTTTGAACAAGTCCAAAATGATGTTGAAATGATATCTCCAATGTTTTTCTTTGAGGAAGAAGAAGGGTTTATTGGGTACAATCCAAATAATATTATGGAAAGATCAGCCTTTGATGTTTCATTTGAGGAAAGTTTTGCTTATCCACGGTAA | 621 | 42.83 | MTGLTPSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFSAVHKVFGASNVSKLLLHLPEHIRSHAAMTVAYEALERMRDPTYGCIAHIFALQQEIASLQEEIEILGSQITNFTVGNGGVATVEIPFIELQVSNQQNDLAMNTNDNQNELLSQMSHQTFEQVQNDVEMISPMFFFEEEEGFIGYNPNNIMERSAFDVSFEESFAYPR | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 40762582 | 40764454 | + | Sed0003059.1 | Sed07g2503 | 721367 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2503 | 206 | Coils | Coil | 88 | 108 | - | - | |
Sed07g2503 | 206 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 3 | 160 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Sed07g2503 | 206 | ProSiteProfiles | LOB domain profile. | 7 | 109 | IPR004883 | - | |
Sed07g2503 | 206 | Pfam | Lateral organ boundaries (LOB) domain | 8 | 104 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g2503 | Sed-Chr7:40762582 | Sed09g0109 | Sed-Chr9:822546 | 4.00E-32 | dispersed | |
Sed07g2503 | Sed-Chr7:40762582 | Sed02g1589 | Sed-Chr2:51458567 | 1.80E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39192 | PF03195 | LOB | 3.60E-33 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2503 | K13945 | - | csv:101204875 | 279.256 |