Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2504 ATGGCAAATCGATGGTGGGCTGAAAATATACCCACTACTACAGACAGTAGTACCAGCAATCCTTATTCAACTCCATTGAAGCAGACCTTAGAAGCTGCTGATGAAGAGAATAACTCCGGTAGCCAAGAGAGAGTTGAGCCGGGATCCAGCTCGAGCACGCGCCGCTCCCGTGGGCGGCCGCCGGGGTCGAAGAACAAGCCGAAGCCCCCGATGGTGGTCACGAAGGAGAGCCCGGATGCCCTCCGGAGCCACGTTTTGGAGATCGGTAGCGGCAGCGATATTGTTGAAAGTATCTCGAACTTTGCCCTACGCCGCCAGCGAGGGGTTTCGATCCTCAGTGGAAATGGGGTTGTTGCTAATGTCACTCTAAGGCATCTGGCTGCCCCCGGTGGGGTCATTACGCTACAGGGACGATTCGATATATTGTCGCTTTCGGGTGCTTTTTTGCCTGCCCCAGCTCCTCCGGGGGCTACTGGCTTAACAGTCTACTTGGCTGGTGGACAGGGGCAGGTTGTTGGTGGCATTGTCGTCGGTGCACTCATTGCTACTGGTCCAGTTATTGTTGTTGCTGCGACCTTCACCAATGCGACATTCGAGCGGCTGCCACTTGAGGACGAGGAGGCAGCTGTGGGAGACAAGTCTGGAAATAGCCAAAACAATGCAACTTCTCAGAGTATGGGAGAACAGCAGCAGCATTCAATGGGAGCTTATAATATGGCTCCAAATTTGGTGCCAAATGGTCAGGTTTCTTCTCATGATGTGTTTTGGAGTCCTCCTAGAGCTCCTCCTCCATTTTAA 798 53.26 MANRWWAENIPTTTDSSTSNPYSTPLKQTLEAADEENNSGSQERVEPGSSSSTRRSRGRPPGSKNKPKPPMVVTKESPDALRSHVLEIGSGSDIVESISNFALRRQRGVSILSGNGVVANVTLRHLAAPGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALIATGPVIVVAATFTNATFERLPLEDEEAAVGDKSGNSQNNATSQSMGEQQQHSMGAYNMAPNLVPNGQVSSHDVFWSPPRAPPPF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 40768217 40773756 - Sed0009558.1 Sed07g2504 721368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2504 265 MobiDBLite consensus disorder prediction 1 58 - -
Sed07g2504 265 MobiDBLite consensus disorder prediction 206 232 - -
Sed07g2504 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 209 - -
Sed07g2504 265 CDD DUF296 82 165 IPR005175 -
Sed07g2504 265 MobiDBLite consensus disorder prediction 1 79 - -
Sed07g2504 265 PIRSF ESCAROLA 7 263 IPR014476 GO:0003680(InterPro)
Sed07g2504 265 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Sed07g2504 265 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Sed07g2504 265 Gene3D - 81 211 - -
Sed07g2504 265 MobiDBLite consensus disorder prediction 212 232 - -
Sed07g2504 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Sed07g2504 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 262 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2847 Sed-Chr4:40359313 Sed07g2504 Sed-Chr7:40768217 6.10E-121 dispersed
Sed07g2504 Sed-Chr7:40768217 Sed08g1584 Sed-Chr8:30942651 5.60E-63 dispersed
Sed07g2504 Sed-Chr7:40768217 Sed07g2505 Sed-Chr7:40768217 1.60E-142 tandem
Sed03g0753 Sed-Chr3:4533495 Sed07g2504 Sed-Chr7:40768217 4.00E-50 transposed
Sed04g2846 Sed-Chr4:40359313 Sed07g2504 Sed-Chr7:40768217 6.10E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2504 - - - 0.0