Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2554 ATGGAAGGAAAGGAGGAAGATGTACGGCTCGGAGCCAACAAGTTCAACGAGAGGCAGCCGATCGGGACGGCGGCTCAGGTCCAGGACGACACCAAGGACTACAAGGAGCCGCCGCCGGCGCCGCTGTTCGAGCCGGAGGAGCTGACTTCATGGTCGTTCTACCGAGCCGGAATCGCCGAATTCTTCGCCACCTTCCTCTTCCTCTACATCACCGTCTTGACCGTCATGGGCGTTGTTCGGAGTAACGAACTCAACAAAAACACCTGCGGCACCGTCGGAATCCAGGGCATTGCTTGGGCTTTCGGCGGCATGATCTTCGCCCTCGTTTACTGCACCGCCGGAATCTCCGGGGGGCATATAAATCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGCTGTCGTTGACGAGGGCGATTTTCTACATAGTGATGCAGTGTCTTGGGGCTATTTGCGGCGCCGGTGTCGTTAAGGGCTTCCAGCCGAAGCCCTACGACAGGCTCGGCGGCGGAGCTAATGTTGTAAACGCGGGCTACACCAAAGGCGACGGTCTCGGCGCTGAGATCGTCGGTACCTTTATCCTCGTTTACACCGTCTTCTCCGCCACCGATGCCAAACGTAGCGCCAGAGACTCCCATGTTCCCATTTTGGCTCCATTGCCAATTGGGTTCGCCGTGTTCTTAGTTCACTTGGCCACCATTCCGATCACCGGCACCGGAATCAACCCAGCCCGGAGTTTGGGCGCCGCCATCATCTACAACAACCAAAAAGCCTGGGATCATCATTGGATATTCTGGGTTGGACCATTCATCGGCGCCGCTCTGGCTGCTCTGTACCACCAAGTTGTGATCAGAGCCATTCCTTTCAAGTCCAAGTGA 879 57.0 MEGKEEDVRLGANKFNERQPIGTAAQVQDDTKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNELNKNTCGTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLGGGANVVNAGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNQKAWDHHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41078724 41080422 - Sed0023275.1 Sed07g2554 721418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2554 292 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Sed07g2554 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Sed07g2554 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2554 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2554 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2554 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2554 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2554 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2554 292 CDD MIP 55 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2554 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Sed07g2554 292 FunFam Probable aquaporin PIP1-2 40 292 - -
Sed07g2554 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2554 292 NCBIfam MIP family channel protein 59 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g2554 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 291 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0256 Sed-Chr2:37672131 Sed07g2554 Sed-Chr7:41078724 6.10E-100 dispersed
Sed05g0771 Sed-Chr5:6115347 Sed07g2554 Sed-Chr7:41078724 2.90E-134 dispersed
Sed07g2554 Sed-Chr7:41078724 Sed14g0415 Sed-Chr14:4313852 7.00E-107 dispersed
Sed07g2554 Sed-Chr7:41078724 Sed07g2555 Sed-Chr7:41089377 1.60E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2554 K09872 - csv:101215145 556.599