Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2554 | ATGGAAGGAAAGGAGGAAGATGTACGGCTCGGAGCCAACAAGTTCAACGAGAGGCAGCCGATCGGGACGGCGGCTCAGGTCCAGGACGACACCAAGGACTACAAGGAGCCGCCGCCGGCGCCGCTGTTCGAGCCGGAGGAGCTGACTTCATGGTCGTTCTACCGAGCCGGAATCGCCGAATTCTTCGCCACCTTCCTCTTCCTCTACATCACCGTCTTGACCGTCATGGGCGTTGTTCGGAGTAACGAACTCAACAAAAACACCTGCGGCACCGTCGGAATCCAGGGCATTGCTTGGGCTTTCGGCGGCATGATCTTCGCCCTCGTTTACTGCACCGCCGGAATCTCCGGGGGGCATATAAATCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGCTGTCGTTGACGAGGGCGATTTTCTACATAGTGATGCAGTGTCTTGGGGCTATTTGCGGCGCCGGTGTCGTTAAGGGCTTCCAGCCGAAGCCCTACGACAGGCTCGGCGGCGGAGCTAATGTTGTAAACGCGGGCTACACCAAAGGCGACGGTCTCGGCGCTGAGATCGTCGGTACCTTTATCCTCGTTTACACCGTCTTCTCCGCCACCGATGCCAAACGTAGCGCCAGAGACTCCCATGTTCCCATTTTGGCTCCATTGCCAATTGGGTTCGCCGTGTTCTTAGTTCACTTGGCCACCATTCCGATCACCGGCACCGGAATCAACCCAGCCCGGAGTTTGGGCGCCGCCATCATCTACAACAACCAAAAAGCCTGGGATCATCATTGGATATTCTGGGTTGGACCATTCATCGGCGCCGCTCTGGCTGCTCTGTACCACCAAGTTGTGATCAGAGCCATTCCTTTCAAGTCCAAGTGA | 879 | 57.0 | MEGKEEDVRLGANKFNERQPIGTAAQVQDDTKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNELNKNTCGTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLGGGANVVNAGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNQKAWDHHWIFWVGPFIGAALAALYHQVVIRAIPFKSK | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 41078724 | 41080422 | - | Sed0023275.1 | Sed07g2554 | 721418 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2554 | 292 | SUPERFAMILY | Aquaporin-like | 46 | 285 | IPR023271 | - | |
Sed07g2554 | 292 | Gene3D | Glycerol uptake facilitator protein. | 40 | 291 | IPR023271 | - | |
Sed07g2554 | 292 | PRINTS | Major intrinsic protein family signature | 55 | 74 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed07g2554 | 292 | PRINTS | Major intrinsic protein family signature | 223 | 245 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed07g2554 | 292 | PRINTS | Major intrinsic protein family signature | 263 | 283 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed07g2554 | 292 | PRINTS | Major intrinsic protein family signature | 101 | 125 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed07g2554 | 292 | PRINTS | Major intrinsic protein family signature | 138 | 157 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed07g2554 | 292 | PRINTS | Major intrinsic protein family signature | 187 | 205 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed07g2554 | 292 | CDD | MIP | 55 | 283 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed07g2554 | 292 | ProSitePatterns | MIP family signature. | 119 | 127 | IPR022357 | - | |
Sed07g2554 | 292 | FunFam | Probable aquaporin PIP1-2 | 40 | 292 | - | - | |
Sed07g2554 | 292 | Pfam | Major intrinsic protein | 47 | 280 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed07g2554 | 292 | NCBIfam | MIP family channel protein | 59 | 280 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed07g2554 | 292 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 5 | 291 | IPR034294 | GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0256 | Sed-Chr2:37672131 | Sed07g2554 | Sed-Chr7:41078724 | 6.10E-100 | dispersed | |
Sed05g0771 | Sed-Chr5:6115347 | Sed07g2554 | Sed-Chr7:41078724 | 2.90E-134 | dispersed | |
Sed07g2554 | Sed-Chr7:41078724 | Sed14g0415 | Sed-Chr14:4313852 | 7.00E-107 | dispersed | |
Sed07g2554 | Sed-Chr7:41078724 | Sed07g2555 | Sed-Chr7:41089377 | 1.60E-159 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2554 | K09872 | - | csv:101215145 | 556.599 |