Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2568 ATGGTCATAAAGAAGGACCAGAATTGTCTTTTCTCATTGGCCGATTCTTTCCCTTCCAAAAATCCCACTCTCACCCCCACGCGCGTCTTCCTCACCCGACTGGCCTTATCTTCCATCCGAGCTGAAGCGAATCTTCCGGCGCTGTTTCGGTCGTCGGAGAGGCGGTTTAGGATCCGCTACTCCATGGCTGAGTTGACTCAGCCGGAGGTCTATTCACTGAGGACTCTGCAGGTTTGGAAGACGCTGTTGAACTGGTTGGCTTTCTTCTTCCAGATCTTCGTTTCGATCCTCAGAGCTTTTGCTCACCTTCGGCTTCTTTCTTCTTCGGATGATTCCTCGTCTCCGTCTTTTAAGCCTTTGCCGGCCGTTGAGCTTTCCGACCATGAGTTGCTCGCTGCTTCCGCCGTTGATATTGCCTCTGTTGAAGACGAGGATGAGTCCGACGGGATTATGGAGAAACTGACGATAGTTCTTGACTTGGATGAAACTCTCATATGTGCATATGAGACATCAAGTTTGCCTGCTACTATTCGTAATCAAGCAGTAGAAGCTGGATTGAAGTGTTTCGAACTCGAGTGCTTTTCTTCAGATAAGGACTGTGAAGGAAAGCCTAAGGTTAACTATGTTACAGTCTTTGAGCGTCCGGGTCTGCATGATTTCTTAAACCAACTAGGTCGATTTGCTGATCTTGTACTCTTCACTGCTGGTCTTGAAGGATATGCAAGGCCTCTTGTTGACAGGATTGATAAGGAAAATCGATTTAGTCTTCGACTTTATAGGCCTTCAACAATTAGTACGGAATATCGAGATCACGTGAAGGATCTCTCCAGCTTATCAAAAGATCTAAGAAGAATAGTCATTGTTGACAATAATCCTTTCAGCTTTTTATTGCAACCTCTGAATGGAATTCCTTGCATTCCATTTTCTGCAGGGCAACCACACGACACACAGCTTTTGAATGTCATCCTTCCACTCCTAAAGCAACTGTCGATGCAGAGCGATGTCAGACCGGTGCTGTACGAAAGATTCCATATGCCAGAATGGTTTCAGAAGCATGGAGTTCCATCCTAA 1071 46.03 MVIKKDQNCLFSLADSFPSKNPTLTPTRVFLTRLALSSIRAEANLPALFRSSERRFRIRYSMAELTQPEVYSLRTLQVWKTLLNWLAFFFQIFVSILRAFAHLRLLSSSDDSSSPSFKPLPAVELSDHELLAASAVDIASVEDEDESDGIMEKLTIVLDLDETLICAYETSSLPATIRNQAVEAGLKCFELECFSSDKDCEGKPKVNYVTVFERPGLHDFLNQLGRFADLVLFTAGLEGYARPLVDRIDKENRFSLRLYRPSTISTEYRDHVKDLSSLSKDLRRIVIVDNNPFSFLLQPLNGIPCIPFSAGQPHDTQLLNVILPLLKQLSMQSDVRPVLYERFHMPEWFQKHGVPS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41217222 41221059 - Sed0024436.1 Sed07g2568 721432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2568 356 PANTHER DULLARD PROTEIN PHOSPHATASE 141 342 IPR050365 GO:0004721(PANTHER)
Sed07g2568 356 NCBIfam dullard-like phosphatase domain 153 339 IPR011948 GO:0016791(InterPro)
Sed07g2568 356 CDD HAD_FCP1-like 153 305 - -
Sed07g2568 356 Pfam NLI interacting factor-like phosphatase 154 336 IPR004274 -
Sed07g2568 356 ProSiteProfiles FCP1 homology domain profile. 149 329 IPR004274 -
Sed07g2568 356 Gene3D - 143 343 IPR023214 -
Sed07g2568 356 FunFam CTD small phosphatase-like protein 2 142 342 - -
Sed07g2568 356 SUPERFAMILY HAD-like 152 340 IPR036412 -
Sed07g2568 356 SMART forpap2 152 316 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2568 K15731 - - csv:101212176 516.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0218 Sed-Chr2:35334748 Sed07g2568 Sed-Chr7:41217222 5.30E-102 dispersed
Sed04g2902 Sed-Chr4:40698095 Sed07g2568 Sed-Chr7:41217222 1.90E-138 dispersed
Sed04g2903 Sed-Chr4:40698095 Sed07g2568 Sed-Chr7:41217222 1.00E-96 dispersed
Sed04g2904 Sed-Chr4:40698095 Sed07g2568 Sed-Chr7:41217222 3.30E-97 dispersed
Sed07g2568 Sed-Chr7:41217222 Sed10g0206 Sed-Chr10:1192396 2.20E-17 dispersed
Sed04g2901 Sed-Chr4:40698095 Sed07g2568 Sed-Chr7:41217222 3.70E-148 wgd
Sed04g1160 Sed-Chr4:23938521 Sed07g2568 Sed-Chr7:41217222 1.60E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g671 . . . . . Bpe10g00844 Bma14g01802 Bma15g00179 . . . . . . Sed07g2568 . . Bhi07g01744 Tan04g0166 Cmetu10g0943 Lac13g0190 Hepe10g0024 . . Cla05g02552 Cam05g2740 Cec05g2772 Cco05g2812 Clacu05g2741 . . . . . . Lsi04g00560 Csa05g02326 Chy10g00893 Cme10g00536 Blo06g00883 . Bda07g01611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002098 2 2 3 2 3 1 3 1 1 2 2 2 3 2 2 2 1 4 3 2 2 2 2 1 1 2 2 6 2 2 65