Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2569 ATGGCGTTGATCTCTTCCAGCCCTCGCAACGTCGAAGACATCTTCAAGGATTACAGCGCTCGTCGCACAGGCCTTGTGCGAGCCCTCACTTACGATGTTGAGGAGTTCTACTCGGTTTGCGATCCCGAGAAGGAGAATTTGTGTTTGTATGGGCACCCGAATGAGACTTGGGAGGTGGCTTTACCTGCCGAGGAAGTTCCGTCTGAGCTCCCCGAGCCTGCGTTGGGGATCAATTTTGCGAGAGATGGGATGAAGCGTAGAGACTGGCTTTCTTTGGTGGCTGTGCATAGTGATTGCTGGTTGCTTTCTGTGGCGTTTTACTTTGGTGCTCGACTCAACCGCAATGAGCGGAAGCGACTATTCAGCATGATTAATGACCTACCTACTCTCTTTGAAGTTGTGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGACAGTGGAAGTAAATCCAAAAACAGCACAAAGAGGTCACTAGATGGGTCGATTAGAAGCAGCAATCCGAAGCTACTCGATGAGGGCTATGGAGAGGACGAAGATGAGCATGGTGATACTCTCTGTGGGAGCTGTGGAGGGAACTATAATGCAGATGAGTTTTGGATTGGATGCGACATCTGTGAGAGGTGGTACCACGGGAAATGTGTGCGGATAACACCGGCCAAGGCAGAAAGTATCAAGCAGTACAAGTGCCCCTCTTGCAGCACAAAGAAAGGAAGGCCATAG 726 50.0 MALISSSPRNVEDIFKDYSARRTGLVRALTYDVEEFYSVCDPEKENLCLYGHPNETWEVALPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSMINDLPTLFEVVSGRKAVKDKPSMDSGSKSKNSTKRSLDGSIRSSNPKLLDEGYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAESIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41225394 41242679 + Sed0017594.1 Sed07g2569 721433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2569 241 MobiDBLite consensus disorder prediction 149 166 - -
Sed07g2569 241 SMART PHD_3 187 235 IPR001965 -
Sed07g2569 241 PANTHER CPG BINDING PROTEIN 7 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g2569 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Sed07g2569 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Sed07g2569 241 Pfam PHD-finger 188 234 IPR019787 -
Sed07g2569 241 CDD PHD_AL_plant 187 237 IPR044104 -
Sed07g2569 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Sed07g2569 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Sed07g2569 241 FunFam PHD finger alfin-like protein 180 236 - -
Sed07g2569 241 Pfam Alfin 11 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g2569 241 MobiDBLite consensus disorder prediction 141 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2569 Sed-Chr7:41225394 Sed09g1666 Sed-Chr9:40082862 1.30E-87 dispersed
Sed07g2569 Sed-Chr7:41225394 Sed07g2570 Sed-Chr7:41225394 5.70E-139 tandem
Sed04g2905 Sed-Chr4:40711465 Sed07g2569 Sed-Chr7:41225394 1.20E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39199 PF12165 Alfin 1.00E-68 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2569 K26274 - csv:101211934 468.774