Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2570 ATGGCGTTGATCTCTTCCAGCCCTCGCAACGTCGAAGACATCTTCAAGGATTACAGCGCTCGTCGCACAGGCCTTGTGCGAGCCCTCACTTACGATGTTGAGGAGTTCTACTCGGTTTGCGATCCCGAGAAGGAGAATTTGTGTTTGTATGGGCACCCGAATGAGACTTGGGAGGTGGCTTTACCTGCCGAGGAAGTTCCGTCTGAGCTCCCCGAGCCTGCGTTGGGGATCAATTTTGCGAGAGATGGGATGAAGCGTAGAGACTGGCTTTCTTTGGTGGCTGTGCATAGTGATTGCTGGTTGCTTTCTGTGGCGTTTTACTTTGGTGCTCGACTCAACCGCAATGAGCGGAAGCGACTATTCAGCATGATTAATGACCTACCTACTCTCTTTGAAGTTGTGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGACAGTGGAAGTAAATCCAAAAACAGCACAAAGCAAACGAATTTATCTTTGCAGAGGTCACTAGATGGGTCGATTAGAAGCAGCAATCCGAAGCTACTCGATGAGGGCTATGGAGAGGACGAAGATGAGCATGGTGATACTCTCTGTGGGAGCTGTGGAGGGAACTATAATGCAGATGAGTTTTGGATTGGATGCGACATCTGTGAGAGGTGGTACCACGGGAAATGTGTGCGGATAACACCGGCCAAGGCAGAAAGTATCAAGCAGTACAAGTGCCCCTCTTGCAGCACAAAGAAAGGAAGGCCATAG 747 49.53 MALISSSPRNVEDIFKDYSARRTGLVRALTYDVEEFYSVCDPEKENLCLYGHPNETWEVALPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSMINDLPTLFEVVSGRKAVKDKPSMDSGSKSKNSTKQTNLSLQRSLDGSIRSSNPKLLDEGYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAESIKQYKCPSCSTKKGRP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41225394 41242679 + Sed0017594.2 Sed07g2570 721434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2570 248 MobiDBLite consensus disorder prediction 141 185 - -
Sed07g2570 248 SMART PHD_3 194 242 IPR001965 -
Sed07g2570 248 Pfam PHD-finger 195 241 IPR019787 -
Sed07g2570 248 Pfam Alfin 11 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g2570 248 PANTHER CPG BINDING PROTEIN 7 247 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed07g2570 248 MobiDBLite consensus disorder prediction 149 173 - -
Sed07g2570 248 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Sed07g2570 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 243 IPR013083 -
Sed07g2570 248 SUPERFAMILY FYVE/PHD zinc finger 183 246 IPR011011 -
Sed07g2570 248 FunFam PHD finger alfin-like protein 187 243 - -
Sed07g2570 248 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Sed07g2570 248 CDD PHD_AL_plant 194 244 IPR044104 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2905 Sed-Chr4:40711465 Sed07g2570 Sed-Chr7:41225394 4.90E-125 dispersed
Sed07g2570 Sed-Chr7:41225394 Sed09g1666 Sed-Chr9:40082862 1.40E-87 dispersed
Sed07g2569 Sed-Chr7:41225394 Sed07g2570 Sed-Chr7:41225394 5.70E-139 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39200 PF12165 Alfin 1.10E-68 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2570 K26274 - csv:101211934 461.84