Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2572 ATGTGCAGTGGCTCAAAGAATAAAGTTGCTTCCTCGAATTCTGCCATGGAAGCCAAGTTTGCGAAGCTTAATGATGGGGGCTTGTTTTCTGCGAGTTCAATTTTGCTTGAACTATCTGCTTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAAGGGTTTGGATGTTGATGAGCCAAGCTGCTGGTATGGAAGAGGAATTGGATCAAAGAAGATGGGTTTTGAAAATAGAACTCCACTGATGATTGCTGCCATGTTTGGAAGTTCCAAGGTTGTGAAGTACTTAATTGAGACTGGCAAGGTTGATGTCAACAGGGCTTGTGGTTCAGATATGGTCACTGCCCTTCACTGTGCCACTTCTGGTGGCTCTGGTTCTTCCCTTGAGACCATCAAGCTCTTGGTCGACGGGTCTGCTGATGTCGATTGTGTCGATGCTAATGGGAGGAAGCCTGTTGATTTGATTGTTTCAGCTTTCAGGATGGTGTGTAATTCAGCAAGAAAAGCTATGGAGATGTTGTTGGGAGGAGATGGTATAGCTGGGGAAGGTGATCTGAGCCTTTATCTTGAAGAAGACCAACAGAAGATTATAGCTTCCCGATCAGCGAAAGAAGGAAGTGACAAGAAAGAGTATCCTGTTGATGTATCGATGCCGGACATCAATAGCGGGATGTATGGTACTGATGATTTCAGGATGTATACCTTCAAGGTGAAGCCTTGTTCGAGGGCTTATTCGCACGATTGGACTGAGTGTCCTTTCGTTCATCCTGGTGAGAACGCTAGGCGCAGAGACCCCAAGAAGTACCCATATAGTTGTGTCCCGTGCCCCGAATTCCGTAAGGGGGCTTGCCCCAAGGGAGATTCATGTGAGTATGCTCATGGTGTATTCGAGTCTTGGCTCCATCCTGCTCAATACCGAACCCGGCTCTGCAAGGATGAGACTGGCTGTGCTAGGAAGGTTTGCTTCTTTGCTCATAGACGCGAAGAATTGCGCCCTGTATATGCTTCAACTGGTTCAGGCATGCCTTCACCCAGGTCTCATTCGAGCAGCGCAGCAGATATGTCTACCATGAGCCCTTTGGCTCTTGGTTCATCATCATCACTATCGCTGCCGACTACTTCGACGCCGCCCATGTCTCCTTTAGCATCAGTATCCTCACCTATGAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTTTGCAACTCCCCGGTAGCCGGTTAAAGACCACCTTTCGTGCAAGAGATCTTGATTTAGAAATGGAATTGCTCGGGTTGGAAAAGAACGCCAGCCAATTACAACATCAACAGCAGTTGATCGACGAGATATCCCGGCTCTCCTCTCCTTCTTACTGGAGTGCAGATGTAAGCAGGAGTGCAGAGTTGAAGCCATCAAACCTTGATGATATGTTTGGATCATTAGATTCTTCCATGTTGTCTCAGTTGCAAGGCACCTCGCTAAAGACACCAATCTCGGCTCAAGTTCAGTCTCCTACTGGGCTGCAGATGCGCCAAAACATGAACCAACTCCGTGCAAGTTACCCAGTGAACTTATCATCCTCACCTGTAAAGAAACCCTCCTCATTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCCGCCTTTGCAAAACGAAGCCAAAGTTTCATCGATCGTGCTGCTGTGCCCCGTCTTCCTGGTTATACTACAGCTGCAAACTCTGCAGCTACAATGTCTTCCCATCAATCTGACTGGAACTCACCTGACGGGAAACTAGACTGGGGAATGCACGGCAACGATTTCAACAAACTCAAGAAGTCTGCATCATTTGCAATCCGAAAGAATAGTATTGGAGCTACCGCCTTTGCACCATCAGCAGGGGAGCCTGATGTCTCGTGGGTTAACTCCTTGGTTAGAGATGTTCCCTCCAACAGCTTTGAGCGCTTCGGTACGGAGAATCGGCCATACAACCTCAAAAGAGAAATCAATGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2064 47.82 MCSGSKNKVASSNSAMEAKFAKLNDGGLFSASSILLELSASDDVEGFKREVEEKGLDVDEPSCWYGRGIGSKKMGFENRTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDMVTALHCATSGGSGSSLETIKLLVDGSADVDCVDANGRKPVDLIVSAFRMVCNSARKAMEMLLGGDGIAGEGDLSLYLEEDQQKIIASRSAKEGSDKKEYPVDVSMPDINSGMYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHRREELRPVYASTGSGMPSPRSHSSSAADMSTMSPLALGSSSSLSLPTTSTPPMSPLASVSSPMNGNLWQNKINLTPPALQLPGSRLKTTFRARDLDLEMELLGLEKNASQLQHQQQLIDEISRLSSPSYWSADVSRSAELKPSNLDDMFGSLDSSMLSQLQGTSLKTPISAQVQSPTGLQMRQNMNQLRASYPVNLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVPRLPGYTTAANSAATMSSHQSDWNSPDGKLDWGMHGNDFNKLKKSASFAIRKNSIGATAFAPSAGEPDVSWVNSLVRDVPSNSFERFGTENRPYNLKREINEMLPSWMEQQLYAEQEQIVA 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41300520 41303832 + Sed0026304.1 Sed07g2572 721436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2572 687 SMART ANK_2a 77 107 IPR002110 GO:0005515(InterPro)
Sed07g2572 687 SMART ANK_2a 112 144 IPR002110 GO:0005515(InterPro)
Sed07g2572 687 SMART c3hfinal6 305 328 IPR000571 GO:0046872(InterPro)
Sed07g2572 687 SMART c3hfinal6 270 296 IPR000571 GO:0046872(InterPro)
Sed07g2572 687 Pfam Ankyrin repeats (3 copies) 77 144 IPR002110 GO:0005515(InterPro)
Sed07g2572 687 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872(InterPro)
Sed07g2572 687 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Sed07g2572 687 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515(InterPro)
Sed07g2572 687 MobiDBLite consensus disorder prediction 340 384 - -
Sed07g2572 687 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515(InterPro)
Sed07g2572 687 Gene3D - 271 333 - -
Sed07g2572 687 SUPERFAMILY Ankyrin repeat 44 154 IPR036770 -
Sed07g2572 687 MobiDBLite consensus disorder prediction 335 384 - -
Sed07g2572 687 Gene3D - 32 174 IPR036770 -
Sed07g2572 687 PANTHER UNKEMPT FAMILY MEMBER 74 644 IPR045234 -
Sed07g2572 687 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Sed07g2572 687 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 295 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0827 Sed-Chr1:6085266 Sed07g2572 Sed-Chr7:41300520 1.50E-197 dispersed
Sed07g2572 Sed-Chr7:41300520 Sed12g1226 Sed-Chr12:8602749 1.90E-126 dispersed
Sed04g2907 Sed-Chr4:40752391 Sed07g2572 Sed-Chr7:41300520 0.00E+00 wgd
Sed05g3774 Sed-Chr5:45496311 Sed07g2572 Sed-Chr7:41300520 4.90E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39201 PF12796 Ank_2 3.60E-09 CL0465 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2572 - - - 0.0