Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2577 ATGTGCGCCGTTGCAGTGCCGAAAACGACGACGGCGACCACTCCATCATTCTCATCGCCAAAAATCGCTTCGTTTCTCTACAACTCTTCTCTGAATTATTGTGGTTGTTGTGGTTCTTCTTCTTCTTCTTCTTCTCCTTGTTCGCCGAGATCGGTATCCAGTCCTCGGAAGCTTCATGTCTCTGCATCTTCGCCGTCGTTGTCGCAACTTCCGCCTCCTGTTTCGCCGTTGGCTGTTGATATGGCTCTGAAGAGGAAGAGGCCGGAGAGAATCGACATTCCGAGGTCGGTTTCGCCGCCGGTTGGTTTCGGATTTGGAATTGAGCAACCGGAGGTCGTGGAGGAGGAAGGGGAAGGATATTCGGTTTATTGTAAGAGAGGAAGAAGACGCACTGCTATGGAGGATCGATTCTCTGCTAGCGTTGGAATTCACGGAGATTCTCGTCAGGCATTTTTCGGAGTTTACGACGGACACGGCGGAGCAAAAGTAGCGGAAATCGCCGCGAATAGAATGAGCAGAAACGTGATCGATCAATTAACAAGGAGAACAACCGTATCGGAGATCGAAATCGCAATCAAAGACGGCTATATCGCCACCGATCGGGAGGTATCAGAGGAAGGCGTGAGCGGCGGCGCCTGTTGCGCCGCCGCATTGATACAAAACGGAAACCTCGCAGTCTCGAACGTCGGCGATTGCCGCGCCGTGTTGAGCCGGAGAGGAAAAGCTGAAGCCCTAACCTCCGATCACCGTCCGTCCAGAGAAGACGAGAGAAATCGAATCGAAAATTCTGGCGGATATGTAGATTGTTGCCGCGGTGCGTGGAGAGTTCAAGGAACGTTGGCTGTGTCAAGAGCCATTGGAGATGAACATCTGAAACAGTGGGTGATTTCGGAGCCGGAGACGAAAGTGGTGAAGATTGATGAAGATTGCGATTTCTTGATTCTTGCTTCTGATGGCCTTTGGGACAAGGTTACAAATGAGGAAGCAGTAAGCATAGTGCAAAGGCTATGCGGCATAGAAACGGAGAAGCAGACAAAGCTGCTGTCAGCCTGCAAAGAGCTAGCCGCCTTGTCAACATCACGAGGCTCTCTAGACGACACCACTGTTATGATCATCAAATTGCCTTCATTCCTCTGA 1137 51.01 MCAVAVPKTTTATTPSFSSPKIASFLYNSSLNYCGCCGSSSSSSSPCSPRSVSSPRKLHVSASSPSLSQLPPPVSPLAVDMALKRKRPERIDIPRSVSPPVGFGFGIEQPEVVEEEGEGYSVYCKRGRRRTAMEDRFSASVGIHGDSRQAFFGVYDGHGGAKVAEIAANRMSRNVIDQLTRRTTVSEIEIAIKDGYIATDREVSEEGVSGGACCAAALIQNGNLAVSNVGDCRAVLSRRGKAEALTSDHRPSREDERNRIENSGGYVDCCRGAWRVQGTLAVSRAIGDEHLKQWVISEPETKVVKIDEDCDFLILASDGLWDKVTNEEAVSIVQRLCGIETEKQTKLLSACKELAALSTSRGSLDDTTVMIIKLPSFL 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41354034 41357676 + Sed0025238.1 Sed07g2577 721441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2577 378 SMART PP2C_4 112 372 IPR001932 -
Sed07g2577 378 FunFam probable protein phosphatase 2C 25 112 377 - -
Sed07g2577 378 SUPERFAMILY PP2C-like 120 375 IPR036457 -
Sed07g2577 378 PANTHER PROTEIN PHOSPHATASE 113 372 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g2577 378 MobiDBLite consensus disorder prediction 41 73 - -
Sed07g2577 378 ProSitePatterns PPM-type phosphatase domain signature. 151 159 IPR000222 GO:0043169(InterPro)
Sed07g2577 378 ProSiteProfiles PPM-type phosphatase domain profile. 119 374 IPR001932 -
Sed07g2577 378 SMART PP2C_SIG_2 128 374 IPR001932 -
Sed07g2577 378 CDD PP2Cc 120 374 IPR001932 -
Sed07g2577 378 Gene3D - 120 377 IPR036457 -
Sed07g2577 378 MobiDBLite consensus disorder prediction 41 68 - -
Sed07g2577 378 Pfam Protein phosphatase 2C 124 365 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1172 Sed-Chr1:8722188 Sed07g2577 Sed-Chr7:41354034 1.10E-93 dispersed
Sed03g2656 Sed-Chr3:42783640 Sed07g2577 Sed-Chr7:41354034 2.60E-62 dispersed
Sed07g2577 Sed-Chr7:41354034 Sed13g1480 Sed-Chr13:19999970 1.30E-97 dispersed
Sed07g2577 Sed-Chr7:41354034 Sed07g2578 Sed-Chr7:41354034 1.20E-135 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2577 K17506 - csv:101208170 457.218