Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2578 ATGTGCGCCGTTGCAGTGCCGAAAACGACGACGGCGACCACTCCATCATTCTCATCGCCAAAAATCGCTTCGTTTCTCTACAACTCTTCTCTGAATTATTGTGGTTGTTGTGGTTCTTCTTCTTCTTCTTCTTCTCCTTGTTCGCCGAGATCGGTATCCAGTCCTCGGAAGCTTCATGTCTCTGCATCTTCGCCGTCGTTGTCGCAACTTCCGCCTCCTGTTTCGCCGTTGGCTGTTGATATGGCTCTGAAGAGGAAGAGGCCGGAGAGAATCGACATTCCGAGGTCGGTTTCGCCGCCGGTTGGTTTCGGATTTGGAATTGAGCAACCGGAGGTCGTGGAGGAGGAAGGGGAAGGATATTCGGTTTATTGTAAGAGAGGAAGAAGACGCACTGCTATGGAGGATCGATTCTCTGCTAGCGTTGGAATTCACGGAGATTCTCGTCAGGCATTTTTCGGAGTTTACGACGGACACGGCGGAGCAAAAGTAGCGGAAATCGCCGCGAATAGAATGAGCAGAAACGTGATCGATCAATTAACAAGGAGAACAACCGTATCGGAGATCGAAATCGCAATCAAAGACGGCTATATCGCCACCGATCGGGAGGTATCAGAGGAAGGCGTGAGCGGCGGCGCCTGTTGCGCCGCCGCATTGATACAAAACGGAAACCTCGCAGTCTCGAACGTCGGCGATTGCCGCGCCGTGTTGAGCCGGAGAGGAAAAGCTGAAGCCCTAACCTCCGATCACCGTCCGTCCAGAGAAGACGAGAGAAATCGAATCGAAAATTCTGTGAGAATCGGAATCAGCTGTGAATCATGTACAAATTCAATTGATTCTTGA 840 51.19 MCAVAVPKTTTATTPSFSSPKIASFLYNSSLNYCGCCGSSSSSSSPCSPRSVSSPRKLHVSASSPSLSQLPPPVSPLAVDMALKRKRPERIDIPRSVSPPVGFGFGIEQPEVVEEEGEGYSVYCKRGRRRTAMEDRFSASVGIHGDSRQAFFGVYDGHGGAKVAEIAANRMSRNVIDQLTRRTTVSEIEIAIKDGYIATDREVSEEGVSGGACCAAALIQNGNLAVSNVGDCRAVLSRRGKAEALTSDHRPSREDERNRIENSVRIGISCESCTNSIDS 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41354034 41357676 + Sed0025238.2 Sed07g2578 721442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2578 279 PANTHER PROTEIN PHOSPHATASE 111 263 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g2578 279 Gene3D - 108 269 IPR036457 -
Sed07g2578 279 MobiDBLite consensus disorder prediction 41 73 - -
Sed07g2578 279 ProSitePatterns PPM-type phosphatase domain signature. 151 159 IPR000222 GO:0043169(InterPro)
Sed07g2578 279 Pfam Protein phosphatase 2C 124 262 IPR001932 -
Sed07g2578 279 CDD PP2Cc 120 263 IPR001932 -
Sed07g2578 279 ProSiteProfiles PPM-type phosphatase domain profile. 119 279 IPR001932 -
Sed07g2578 279 MobiDBLite consensus disorder prediction 41 68 - -
Sed07g2578 279 SUPERFAMILY PP2C-like 120 262 IPR036457 -
Sed07g2578 279 SMART PP2C_4 112 279 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2578 Sed-Chr7:41354034 Sed13g1480 Sed-Chr13:19999970 1.10E-56 dispersed
Sed07g2577 Sed-Chr7:41354034 Sed07g2578 Sed-Chr7:41354034 1.20E-135 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2578 K17506 - csv:101208170 284.263