Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2578 | ATGTGCGCCGTTGCAGTGCCGAAAACGACGACGGCGACCACTCCATCATTCTCATCGCCAAAAATCGCTTCGTTTCTCTACAACTCTTCTCTGAATTATTGTGGTTGTTGTGGTTCTTCTTCTTCTTCTTCTTCTCCTTGTTCGCCGAGATCGGTATCCAGTCCTCGGAAGCTTCATGTCTCTGCATCTTCGCCGTCGTTGTCGCAACTTCCGCCTCCTGTTTCGCCGTTGGCTGTTGATATGGCTCTGAAGAGGAAGAGGCCGGAGAGAATCGACATTCCGAGGTCGGTTTCGCCGCCGGTTGGTTTCGGATTTGGAATTGAGCAACCGGAGGTCGTGGAGGAGGAAGGGGAAGGATATTCGGTTTATTGTAAGAGAGGAAGAAGACGCACTGCTATGGAGGATCGATTCTCTGCTAGCGTTGGAATTCACGGAGATTCTCGTCAGGCATTTTTCGGAGTTTACGACGGACACGGCGGAGCAAAAGTAGCGGAAATCGCCGCGAATAGAATGAGCAGAAACGTGATCGATCAATTAACAAGGAGAACAACCGTATCGGAGATCGAAATCGCAATCAAAGACGGCTATATCGCCACCGATCGGGAGGTATCAGAGGAAGGCGTGAGCGGCGGCGCCTGTTGCGCCGCCGCATTGATACAAAACGGAAACCTCGCAGTCTCGAACGTCGGCGATTGCCGCGCCGTGTTGAGCCGGAGAGGAAAAGCTGAAGCCCTAACCTCCGATCACCGTCCGTCCAGAGAAGACGAGAGAAATCGAATCGAAAATTCTGTGAGAATCGGAATCAGCTGTGAATCATGTACAAATTCAATTGATTCTTGA | 840 | 51.19 | MCAVAVPKTTTATTPSFSSPKIASFLYNSSLNYCGCCGSSSSSSSPCSPRSVSSPRKLHVSASSPSLSQLPPPVSPLAVDMALKRKRPERIDIPRSVSPPVGFGFGIEQPEVVEEEGEGYSVYCKRGRRRTAMEDRFSASVGIHGDSRQAFFGVYDGHGGAKVAEIAANRMSRNVIDQLTRRTTVSEIEIAIKDGYIATDREVSEEGVSGGACCAAALIQNGNLAVSNVGDCRAVLSRRGKAEALTSDHRPSREDERNRIENSVRIGISCESCTNSIDS | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 41354034 | 41357676 | + | Sed0025238.2 | Sed07g2578 | 721442 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2578 | 279 | PANTHER | PROTEIN PHOSPHATASE | 111 | 263 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed07g2578 | 279 | Gene3D | - | 108 | 269 | IPR036457 | - | |
Sed07g2578 | 279 | MobiDBLite | consensus disorder prediction | 41 | 73 | - | - | |
Sed07g2578 | 279 | ProSitePatterns | PPM-type phosphatase domain signature. | 151 | 159 | IPR000222 | GO:0043169(InterPro) | |
Sed07g2578 | 279 | Pfam | Protein phosphatase 2C | 124 | 262 | IPR001932 | - | |
Sed07g2578 | 279 | CDD | PP2Cc | 120 | 263 | IPR001932 | - | |
Sed07g2578 | 279 | ProSiteProfiles | PPM-type phosphatase domain profile. | 119 | 279 | IPR001932 | - | |
Sed07g2578 | 279 | MobiDBLite | consensus disorder prediction | 41 | 68 | - | - | |
Sed07g2578 | 279 | SUPERFAMILY | PP2C-like | 120 | 262 | IPR036457 | - | |
Sed07g2578 | 279 | SMART | PP2C_4 | 112 | 279 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g2578 | Sed-Chr7:41354034 | Sed13g1480 | Sed-Chr13:19999970 | 1.10E-56 | dispersed | |
Sed07g2577 | Sed-Chr7:41354034 | Sed07g2578 | Sed-Chr7:41354034 | 1.20E-135 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2578 | K17506 | - | csv:101208170 | 284.263 |