Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2592 | ATGGGCGGCAACTCGCCATGCGCCTCGTGCAAACTCCTCCGCCGACGATGCGCCAAAGACTGCATTTTTGCCCCTTACTTTCCCTCCGATGACCCCCACAAGTTCGCCATTGTTCATAAGGTTTTCGGTGCCAGCAATGTCAGCAAAATGCTCCAGGAATTACCAGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTCTACGAGGCAGGTGCAAGAGTGAGGGACCCAGTCTACGGCTGTGTAGGGGCAATTTCGTACTTACAGAACCAAGTCTCGCAGCTACAAATGCAATTGGCGGTGGCTCAGGCCGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATCACAAACCGCCGTCTCTCCTCCTCCCGCCGCCGTCTCCGCCGCCGTCGCAGTGCCTCAATTTCGCTTCCTCTCCCAATGTAATTTATGACGCCATTTTTGGACATGACATCGTTTCTTAA | 501 | 53.69 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEAGARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDHKPPSLLLPPPSPPPSQCLNFASSPNVIYDAIFGHDIVS | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 41488810 | 41490110 | + | Sed0001239.1 | Sed07g2592 | 721456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2592 | 166 | Coils | Coil | 85 | 105 | - | - | |
Sed07g2592 | 166 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
Sed07g2592 | 166 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
Sed07g2592 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 115 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1854 | Sed-Chr5:31967644 | Sed07g2592 | Sed-Chr7:41488810 | 1.10E-42 | dispersed | |
Sed05g3295 | Sed-Chr5:42296810 | Sed07g2592 | Sed-Chr7:41488810 | 1.50E-45 | dispersed | |
Sed07g2403 | Sed-Chr7:39877444 | Sed07g2592 | Sed-Chr7:41488810 | 9.20E-31 | dispersed | |
Sed07g2592 | Sed-Chr7:41488810 | Sed11g2121 | Sed-Chr11:35104592 | 4.10E-35 | dispersed | |
Sed04g2946 | Sed-Chr4:40984546 | Sed07g2592 | Sed-Chr7:41488810 | 3.00E-34 | wgd | |
Sed05g3791 | Sed-Chr5:45612942 | Sed07g2592 | Sed-Chr7:41488810 | 5.80E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39202 | PF03195 | LOB | 7.80E-42 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2592 | - | - | - | 0.0 |