Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2592 ATGGGCGGCAACTCGCCATGCGCCTCGTGCAAACTCCTCCGCCGACGATGCGCCAAAGACTGCATTTTTGCCCCTTACTTTCCCTCCGATGACCCCCACAAGTTCGCCATTGTTCATAAGGTTTTCGGTGCCAGCAATGTCAGCAAAATGCTCCAGGAATTACCAGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTCTACGAGGCAGGTGCAAGAGTGAGGGACCCAGTCTACGGCTGTGTAGGGGCAATTTCGTACTTACAGAACCAAGTCTCGCAGCTACAAATGCAATTGGCGGTGGCTCAGGCCGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATCACAAACCGCCGTCTCTCCTCCTCCCGCCGCCGTCTCCGCCGCCGTCGCAGTGCCTCAATTTCGCTTCCTCTCCCAATGTAATTTATGACGCCATTTTTGGACATGACATCGTTTCTTAA 501 53.69 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEAGARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDHKPPSLLLPPPSPPPSQCLNFASSPNVIYDAIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41488810 41490110 + Sed0001239.1 Sed07g2592 721456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2592 166 Coils Coil 85 105 - -
Sed07g2592 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Sed07g2592 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Sed07g2592 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1854 Sed-Chr5:31967644 Sed07g2592 Sed-Chr7:41488810 1.10E-42 dispersed
Sed05g3295 Sed-Chr5:42296810 Sed07g2592 Sed-Chr7:41488810 1.50E-45 dispersed
Sed07g2403 Sed-Chr7:39877444 Sed07g2592 Sed-Chr7:41488810 9.20E-31 dispersed
Sed07g2592 Sed-Chr7:41488810 Sed11g2121 Sed-Chr11:35104592 4.10E-35 dispersed
Sed04g2946 Sed-Chr4:40984546 Sed07g2592 Sed-Chr7:41488810 3.00E-34 wgd
Sed05g3791 Sed-Chr5:45612942 Sed07g2592 Sed-Chr7:41488810 5.80E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39202 PF03195 LOB 7.80E-42 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2592 - - - 0.0