Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2623 ATGGTGAGAATGAAGTTTGTTTCCTTGTTTGTGGTTTTGTCAATGTGTGTTGAATCTTTAGCCTCTTTCACTCCCATTGATAACTACTTGGTAGTGTGTGGTTCTTCACATAACATTACTTTCCAAGGAAGAACTTATGTTCCTGATTCTGCTCATTATGGTGGAACCTCTGTGGTTGTTGGTTCAAAACCTGGTTCTGCTCCATCTCCAATTTATGGATTTGCCCGGGTTTTCACCAGCATTGCTTCGTACAAATTCGAAATCAAGAAAGAGGGTCGGCATTGGATTCGGTTGTATTTCTATCCCACTCCGAAGTCGGAGCGGGATTTGGCATCTGCATCGATTACTGTTGTTACTGATAAGTTTGTGCTGTTGAATAACTTCACTTTCAAGAATTACACTGGTTCTTTTATGTTTAAGGAGTATGCAGTCAATGTCACTTCGGATTCCTTGACCCTTACTTTTATCCCTTCTAATGGTTCGGTATCGTTTGTTAATGCGATCGAAGTTGTCTCGGTGCCTGATGAGCTTCTACCTGACCAAGCATTGGCTTTGAATCCATCTGCTCCTTTTAGCGGCATCTCGGAACTTGCTCTTGAAACTGTTTACAGGCTGAACATGGGGGGTCCTTTACTTACTTCGCAAAACGATACGATCGGAAGAACTTGGGAGAATGATATGAAATACCTCCATGTCAATAGTTCTGCTGTGAATGTCTCTGCTAGTCCTGGGAGTATAAAATATCATCCTGGTGTTACACCAGAGACTGCACCTAATTGGGTTTATGCTACTGCCGATGCCATGGGAGACCCGAATGTGGCGATTGTGAACTTCAACTTGACTTGGGTTTTCTCTGTTGAGCCAAATTTTCAATACTTTGTCCGAGTGCATTTTTGTGATATAATAAGCAAGGCTCTCAATAATCTGGTTTTCAATCTGTACATAAATTCTGATATGGCTCTGGGAAGCTTTGATCTGTCGACGTTGACTGGTGACTTGGGTGTGCCTTACTACAAAGACTTCGTTTCTAACTCAGCAGATTCAGGTACTTTGACTGTCAGCATCGGTCCAGATACATTGACAGACATAACTAATGCGACCATCAACGGCTTGGAGATAATGAAGATGAGCAATCAAGCTGGGAGCTTAGATGGAACTTTGTCCCTTGAAAGTCTTTTCCAAAATGCACCCTCGAAGAAGAGCAATGTAGTGATCATTGTCGGTTCTGTCTTAGGAACTGTAGTCGGCCTTGCTTTGCTTGTCGTGTGTTGTTGTTTCTGTTTCTTTGGTTGTAAGTCGAAGACTACTCGACCAGCTCACCCATGGCTGCCTTTGCCCTTGTATGGAAACTCTCTAACCATGACAAAAGGATCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTCATTTCTTTGGCTTCCTCTAGTCTTGGCAGATTCTTCACATTTCAGGAAATCCTTGATGCTACCAACAAATTTGATGAAAACATGCTCCTTGGAGTTGGTGGTTTCGGTAGGGTTTACAAGGGAACACTTGACGATGGTATGAAAGTTGCTGTCAAAAGAGGTAACCCCAGATCAGAACAAGGTCTTGCCGAGTTCCGAACTGAAATAGAAATGTTATCAAAGCTACGACATCGCCACCTGGTGTCTCTTATTGGTTACTGTGATGAAAGATCAGAAATGGTTCTTGTCTATGAATACATGGCAAATGGACCTCTCAGGAGTCATTTGTATGGAACGGATCTACCACCGTTGTCGTGGAAGCAACGACTTGATATTTGCATTGGTGCTGCGAGAGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATAATACACCGAGATGTTAAAACGACAAACATTCTTTTGGATGAAAATTTCGTTGCCAAAGTTGCAGACTTTGGTCTCTCCAAAACTGGGCCATCTCTGGATCAGACTCATGTTAGTACTGCTGTCAAGGGTAGTTTCGGTTACCTTGATCCTGAATACTTCAGGAGACAACAGCTTACTGAGAAGTCGGATGTATATTCATTCGGGGTCGTTCTAATGGAAGTTCTCTGCACGAGGCCAGCGCTAAACCCTGTTCTTCCAAGAGAACAAGTTAATATAGCAGAATGGGCAATGACCTGGCAGAAGAAGGGCATGTTAGATCATATCATGGACCCGAATCTGGTAGGTAAAGTTAATCCAGCATCGCTCAAGAAGTTTGGAGAAACAGCTGAGAAGTGCCTGGCTGAGTATGGGGTTGACAGGCCGTCCATGGGAGACGTCCTGTGGAACCTGGAATACGCTCTTCAACTCGAGGAAACTTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAACCACATCCCTACCATCCAACTCACCCCACTTGAGCTATTTGATAACAGTGTAAATATGATTGATGGTGGGAACTCTGGCACCGACGACGATGCAGAAGATGCTGCAACAAGTGCAGTGTTTTCGCAGCTTGTTAACCCTCGTGGTAGATGA 2505 43.71 MVRMKFVSLFVVLSMCVESLASFTPIDNYLVVCGSSHNITFQGRTYVPDSAHYGGTSVVVGSKPGSAPSPIYGFARVFTSIASYKFEIKKEGRHWIRLYFYPTPKSERDLASASITVVTDKFVLLNNFTFKNYTGSFMFKEYAVNVTSDSLTLTFIPSNGSVSFVNAIEVVSVPDELLPDQALALNPSAPFSGISELALETVYRLNMGGPLLTSQNDTIGRTWENDMKYLHVNSSAVNVSASPGSIKYHPGVTPETAPNWVYATADAMGDPNVAIVNFNLTWVFSVEPNFQYFVRVHFCDIISKALNNLVFNLYINSDMALGSFDLSTLTGDLGVPYYKDFVSNSADSGTLTVSIGPDTLTDITNATINGLEIMKMSNQAGSLDGTLSLESLFQNAPSKKSNVVIIVGSVLGTVVGLALLVVCCCFCFFGCKSKTTRPAHPWLPLPLYGNSLTMTKGSTTSQKSGTASFISLASSSLGRFFTFQEILDATNKFDENMLLGVGGFGRVYKGTLDDGMKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMVLVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLELFDNSVNMIDGGNSGTDDDAEDAATSAVFSQLVNPRGR 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41685629 41688133 - Sed0013661.1 Sed07g2623 721487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2623 834 FunFam Receptor-like protein kinase FERONIA 198 378 - -
Sed07g2623 834 Gene3D - 28 173 - -
Sed07g2623 834 Gene3D - 197 378 - -
Sed07g2623 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2623 834 SUPERFAMILY Protein kinase-like (PK-like) 470 764 IPR011009 -
Sed07g2623 834 Pfam Malectin-like domain 33 375 IPR024788 -
Sed07g2623 834 PANTHER OS07G0166700 PROTEIN 481 770 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Sed07g2623 834 Gene3D Phosphorylase Kinase; domain 1 453 568 - -
Sed07g2623 834 ProSiteProfiles Protein kinase domain profile. 493 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2623 834 Gene3D Transferase(Phosphotransferase) domain 1 569 786 - -
Sed07g2623 834 FunFam receptor-like protein kinase FERONIA 455 568 - -
Sed07g2623 834 ProSitePatterns Protein kinases ATP-binding region signature. 499 521 IPR017441 GO:0005524(InterPro)
Sed07g2623 834 Pfam Protein tyrosine and serine/threonine kinase 498 690 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2623 834 FunFam Putative receptor-like protein kinase 28 174 - -
Sed07g2623 834 CDD STKc_IRAK 499 764 - -
Sed07g2623 834 FunFam Receptor-like protein kinase FERONIA 569 785 - -
Sed07g2623 834 SMART serkin_6 493 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2922 Sed-Chr5:40135434 Sed07g2623 Sed-Chr7:41685629 6.00E-228 dispersed
Sed05g2923 Sed-Chr5:40135434 Sed07g2623 Sed-Chr7:41685629 6.00E-228 dispersed
Sed07g1000 Sed-Chr7:7276048 Sed07g2623 Sed-Chr7:41685629 9.90E-199 dispersed
Sed07g2426 Sed-Chr7:40089513 Sed07g2623 Sed-Chr7:41685629 6.90E-184 dispersed
Sed07g2623 Sed-Chr7:41685629 Sed08g0239 Sed-Chr8:1358785 5.40E-229 dispersed
Sed04g2248 Sed-Chr4:36222997 Sed07g2623 Sed-Chr7:41685629 1.40E-61 transposed
Sed10g0055 Sed-Chr10:354381 Sed07g2623 Sed-Chr7:41685629 5.90E-183 transposed
Sed04g3151 Sed-Chr4:42291401 Sed07g2623 Sed-Chr7:41685629 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79563 PF12819 Malectin_like 2.00E-37 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2623 - - - 0.0