Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g2629 | ATGATGTTATCCGAATCGCCTTCGATGTTAGCTCGGAGTTCACTCGAGGAAATGCTCGATTCACTTCGACGAAGGGATGAGGTTGATAAGCCTAAGGACTTGCCGCCTGCATTGCCGTCTCGGCCCGCTTCGAAGGCAAAACTGCCTCCGGTGGGTCGGGCGTTACCGGTCAATTTCAGGGTTAATGATGATGGCTCATCAGCGTGTTCTATTAATGGCTTTAATGGAAAGGAAGATGCAATGAGAAAGGAGACTGGTGTGGGGAACTTTGCAATCAAGAGAATGAATAGAGATCAAAATGAGGAATCGCCTTATGTGGTTGCTTCTAAAAATGATGATAAAGATCAAGTGAATGGCTCCAATGGTGATTTAATGTCAAATGTTCAAGGGTCTCACTTGCATGACAATATCAGTTATTTTCTTCTTAAGAAACTCCGTGTTTGGTGTCAACTTCCAAATGGACAATGGGAGTTAGGAACCATACAGTCAACCACTGGGGCAGAGGCATCAATCATGCTCTCAAACAAAAAGGTTATTAAAATTTCGACCGTAGATCTTTTACCTGCCAATCCAAATGTAGTGGAGGGGGTTGATGATCTTGTACAGCTTGGTTATTTGAACGAGCCTTCGGTTATTCACAGTCTCCAGCGAAGATTTTCCCGGGATAAGATTTATAGTAATGCAGGGTCAGTTTTGATTGCAGTCAATCCCCTGAAAGACACTAAACAGTATGGAAATGAATCTATTTCAGCATATAGACAGAGAGTCATAAACAGCCCTCATGTTTATGCAACAGCCGGTGCTGCTTATTCTGTGATGATGAAAGATGATGTTAATCAATCCATTATCATCAGTGGCGAAAGTGGAGCGGGAAAAACCGAGACAGCAAAAGTTGCCCTTCAGTACCTAACTGCTCTTGGTGGTGGTGGTGGCATAGATGATAGAATCCCACAGGCGAATATTATACTCGAAGCTTTTGGGAATGCTAAAACGTCCAGAAACAACAATGCCAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTGGCAGAACAGGGAAGATATGTGGTGCTGTAATCCAAACTTTTCTGTTGGAAAAGTCAAGAGTTGTTCAGCTGTTCAGTGGTGAAAGATCATTCCACGTCTTCTATCAACTTTGTGCTGGAGCGCCTTCAACACTCAAAGAGAAGTTGAATATCAGAGCGGCCAGTGAGTACAGTTACCTTAATAACAGTGAATGCCTGGCGATTAGTGGTGTGGATGATGCACAGAAATTTCGTATTCTTGTGGAAGCCCTAGATAAACTTAAATTCAGTAGGGAAGATCAAGAGCATGCATTTGGTTTGCTTTCTGCAGTTTTATGGATAGGGAACATTACGTTTCAAACAATTGATAGCGGAAATCATGTGGAGGTCATAGCTAATGAAGCGGTTGCAAATGCTTCCAAGCTGATGGGCTGCAGTTTTAATGAGCTTAAGTTAGTTTTATCAAGCCACAAAGAGCAATCTGGCAAGGATAGTGCTGCTAAAAAAATGACATTACGACAGGCAACCGATGCAAGAGATGCATTGGCAAAATTTATCTATGCAAGCTTGTTTGATTGGCTTGTAGAGCAGATCAATAAGACACTTAAACCAGGAAGAGAGCATTCTGGAAGATCCATAAATATCGTCGACTTCTATGGGTTTGAGTCATTTAAGAAGAATGGCTTCGAACAATTTTGTATCAATTATGCAAATGAGAGACTGCAGCAGCATTTTGTGCGGCATCTGTTCAAACTTCAACGGGAGGACTACGAATATAACGGGGTTGATGGCACGACAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTCATCGAGAAGAAACCTCTAGGAGTTCTAGCTGTGTTGGACGAGGAGTTAAGTTTTCCCAAGGCTACAGATCTGACATTTGCCAATAAACTTAAGCAACACTTTAAATCTAATCCTTCCTTTAAAGGGGAAAGAGGTAGGGCTTTTGGTGTTCGCCATTATGCTGGAGAGGTTGTCTACGATACAAATGGATTTTTGGAGAAGAATAGAGATCAGTTGCATTCAGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAATTATTTTCCTTCAAACTGTTTAACCCTTCCCACAAACCAACAGTTTCAAAGTGCTCTACAGAAGTAGTAGAATCCCCTGAGCCAGGTGTTGGTACCAAGTACAAGGTTCTACTGTTTGACCTATTCCATAAATTGGAGCGCACCGGCCATCACTTCATTTGTTGCATGAGACCGAACAGAAACCAAGTTTGTGGCTTATTTGAGGAGGACCTTGTTTTACAACAGCTTAGAAACTATGGAATTTTGGAGGTGGTTAGGATTTCAAAATATGGATTTCCTTCCAGAATGACACATCATGAATTTGCTGGAAGGTACGGATTCTTCCTTGGCAAAACTGGTGTATCTCAAGATCCATTGAGCATATCGATGGCTGTTCTGCAACAATTTAATGTTCATCCCGAGTTATACCATGTTGGTTATACTAAACTCTTTTTCCGAACTGGGCAGATGAGGGCATTGGAGGAAAGGAGGATGGAGGTGTTGCAAGGCATCCTAGGGCTTCAAAAGTACTTCCGTGGTTGCCATTCCCGTGGCCACTTCCATGAACATAAGCAAGCCGCCACTACCTTACAATCATTTATTCGTGGTGAAAATGCCAGACGGACATGTACCGGTAAGGTGAAGAGGTTTTCATTCGTCGTGTATGCTATCAGTGTTCCTACGAAGGTTTATGAACTGCAGGCAATCATACGATTGCAATCTGTAATACGTGGTTCATTGGCTCGAAAGCATTTTAAGGGCACAAATTATTCGAAAAAGGTTTTCCTTGAAAACAGAAAATCTAAACCGAACACAGGCAGGAGACTTTCAGAGGATAAATTTCAAGAACGGGGTCTAGCCCTGACTGACCTTCAAAAGCGAGTCTTCGAGGCAGAAGCGACCATAGGGAAAAAGGAAGAGGAAAATGCTGCACTGCGGGACCAAGTAAAACAATTCGAGGCCCGGCGGTTAGAATACGAAGCCAAGATGAAGTCCATGGAAGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTACTGAAAATGTAGCATGTGCACCTGCAAAAGTTGATGCTGGTAACTTGCCACCTCACAATAATAATTCTGAGGATAAGACATCCATGGAATCTCAAACTCCTGAAGTTGGCGCTGGGCGAAAACTGAACAGTACTTTAGCTGCAGTGAACAATCTCGTAAAGGACTTCGAACAGCGAAAGAATGCATTTGATGATGATGCAAAAGCTTTAACTGAAGCAAAATCAGATCAGGCACAGAACGTGAATCCTAACGAAGAATACCGAAAAATTAAAATCCGGTTTGAAGCATGGAAAAAGGAGTACAAGGCAAGATTAAGGGAAACTAAACCCAAGGGTCGTAAACATGGACATTTTGATGTTGATAAGATTGGTAGAAAATGGTGGGGGAAGTTTAGCTCAAAAGCATCATAG | 3582 | 42.16 | MMLSESPSMLARSSLEEMLDSLRRRDEVDKPKDLPPALPSRPASKAKLPPVGRALPVNFRVNDDGSSACSINGFNGKEDAMRKETGVGNFAIKRMNRDQNEESPYVVASKNDDKDQVNGSNGDLMSNVQGSHLHDNISYFLLKKLRVWCQLPNGQWELGTIQSTTGAEASIMLSNKKVIKISTVDLLPANPNVVEGVDDLVQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNESISAYRQRVINSPHVYATAGAAYSVMMKDDVNQSIIISGESGAGKTETAKVALQYLTALGGGGGIDDRIPQANIILEAFGNAKTSRNNNASRFGKLIEILFGRTGKICGAVIQTFLLEKSRVVQLFSGERSFHVFYQLCAGAPSTLKEKLNIRAASEYSYLNNSECLAISGVDDAQKFRILVEALDKLKFSREDQEHAFGLLSAVLWIGNITFQTIDSGNHVEVIANEAVANASKLMGCSFNELKLVLSSHKEQSGKDSAAKKMTLRQATDARDALAKFIYASLFDWLVEQINKTLKPGREHSGRSINIVDFYGFESFKKNGFEQFCINYANERLQQHFVRHLFKLQREDYEYNGVDGTTVNFEDNQECLNLIEKKPLGVLAVLDEELSFPKATDLTFANKLKQHFKSNPSFKGERGRAFGVRHYAGEVVYDTNGFLEKNRDQLHSDSIQLFSSCTCKLLQLFSFKLFNPSHKPTVSKCSTEVVESPEPGVGTKYKVLLFDLFHKLERTGHHFICCMRPNRNQVCGLFEEDLVLQQLRNYGILEVVRISKYGFPSRMTHHEFAGRYGFFLGKTGVSQDPLSISMAVLQQFNVHPELYHVGYTKLFFRTGQMRALEERRMEVLQGILGLQKYFRGCHSRGHFHEHKQAATTLQSFIRGENARRTCTGKVKRFSFVVYAISVPTKVYELQAIIRLQSVIRGSLARKHFKGTNYSKKVFLENRKSKPNTGRRLSEDKFQERGLALTDLQKRVFEAEATIGKKEEENAALRDQVKQFEARRLEYEAKMKSMEDMWQKQMASLQMSLAAAKKTLATENVACAPAKVDAGNLPPHNNNSEDKTSMESQTPEVGAGRKLNSTLAAVNNLVKDFEQRKNAFDDDAKALTEAKSDQAQNVNPNEEYRKIKIRFEAWKKEYKARLRETKPKGRKHGHFDVDKIGRKWWGKFSSKAS | 1193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 41760282 | 41769796 | + | Sed0008404.1 | Sed07g2629 | 721493 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g2629 | 1193 | ProSiteProfiles | Myosin motor domain profile. | 195 | 866 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2629 | 1193 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 434 | 542 | - | - | |
| Sed07g2629 | 1193 | Gene3D | - | 800 | 867 | - | - | |
| Sed07g2629 | 1193 | SMART | MYSc_2a | 189 | 867 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2629 | 1193 | ProSiteProfiles | IQ motif profile. | 933 | 961 | - | - | |
| Sed07g2629 | 1193 | Coils | Coil | 1110 | 1130 | - | - | |
| Sed07g2629 | 1193 | PRINTS | Myosin heavy chain signature | 279 | 304 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2629 | 1193 | PRINTS | Myosin heavy chain signature | 321 | 348 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2629 | 1193 | PRINTS | Myosin heavy chain signature | 225 | 244 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2629 | 1193 | PRINTS | Myosin heavy chain signature | 553 | 581 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2629 | 1193 | PRINTS | Myosin heavy chain signature | 606 | 634 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2629 | 1193 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Sed07g2629 | 1193 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 151 | 912 | IPR027417 | - | |
| Sed07g2629 | 1193 | Pfam | Myosin head (motor domain) | 197 | 854 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2629 | 1193 | SMART | iq_5 | 890 | 912 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2629 | 1193 | SMART | iq_5 | 932 | 954 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2629 | 1193 | SMART | iq_5 | 867 | 889 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2629 | 1193 | ProSiteProfiles | IQ motif profile. | 891 | 919 | - | - | |
| Sed07g2629 | 1193 | CDD | MYSc_Myo8 | 209 | 854 | IPR036022 | - | |
| Sed07g2629 | 1193 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 142 | 191 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed07g2629 | 1193 | Gene3D | - | 872 | 917 | - | - | |
| Sed07g2629 | 1193 | MobiDBLite | consensus disorder prediction | 1073 | 1094 | - | - | |
| Sed07g2629 | 1193 | Gene3D | - | 565 | 756 | - | - | |
| Sed07g2629 | 1193 | Pfam | IQ calmodulin-binding motif | 893 | 910 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2629 | 1193 | Pfam | IQ calmodulin-binding motif | 935 | 954 | IPR000048 | GO:0005515(InterPro) | |
| Sed07g2629 | 1193 | FunFam | Myosin heavy chain | 377 | 433 | - | - | |
| Sed07g2629 | 1193 | Gene3D | Kinesin motor domain | 194 | 799 | IPR036961 | - | |
| Sed07g2629 | 1193 | Gene3D | - | 377 | 433 | - | - | |
| Sed07g2629 | 1193 | MobiDBLite | consensus disorder prediction | 1067 | 1094 | - | - | |
| Sed07g2629 | 1193 | PANTHER | MYOSIN | 146 | 1167 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed07g2629 | 1193 | Coils | Coil | 989 | 1037 | - | - | |
| Sed07g2629 | 1193 | MobiDBLite | consensus disorder prediction | 17 | 34 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g2384 | Sed-Chr7:39651943 | Sed07g2629 | Sed-Chr7:41760282 | 1.90E-291 | dispersed | |
| Sed07g2385 | Sed-Chr7:39651943 | Sed07g2629 | Sed-Chr7:41760282 | 1.90E-291 | dispersed | |
| Sed07g2629 | Sed-Chr7:41760282 | Sed08g0895 | Sed-Chr8:7500253 | 2.90E-143 | dispersed | |
| Sed04g3144 | Sed-Chr4:42237027 | Sed07g2629 | Sed-Chr7:41760282 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g2629 | K10357 | - | csv:101210624 | 1911.35 |