Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2635 ATGATGAACTGTGAGCTGTGTGGGAAGCAAGCGAGGATGTTTTGTGAATCGGATCAGGCGAATCTGTGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTTGTGGCGAAGCATTCTCGGAGCCTTCTTTGTCATGTTTGCCAGTCGCCGACGCCGTGGACGGCGGCGGGGAGGAAGCTTACGCCGACGGTTTCGGTGTGTGAGGGATGTGTGGAGGTTCATGGTGAGAAATGTGAGGAAGGTGGCTATGAAGAGCGGAGTGTTGGTAATGGCGATGATTTCGACGATGGCGAAGATTTCGAGAGTTATGAGGCCGGTGATAGTGAGGACGACGACGAAGACGATAACGAGGAGGAGGACGACGACGAAGATGGAGATAACCAGGTGGTGCCGTGGTCTTATCCGTCTTCTTCCACTCCACCACCGCCTCCGACTCTGACGACGTCTAGCAGCGAGGATGAGATTTCAGCCGGCGCTGGTGGCGCATCGAAGCGGAGGAGAGACTACGGCTGCGGAGATCTCGATTCCGATGACGAAATCGAGTGTTCTTCTGCTCTACAGGCTACCAGGTCATGTTTCAACGATGAAGCGACTTCGTCGAGTTCTCGCAGGCCATTGAAGCAAGCAAAAGTTACAGGACGACCGATCCAATCAGCCAGCATCATCCGTGATGAGGAAACTTGTGAAGAAGAATTGAAAGCCACGGCTGTTGTTAGATCGATCCAGAGTCTTCAAAATCGGGGTCCGACCGACGTTAAGGATGCTTCGAAAATAGTTTATGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA 822 51.95 MMNCELCGKQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWTAAGRKLTPTVSVCEGCVEVHGEKCEEGGYEERSVGNGDDFDDGEDFESYEAGDSEDDDEDDNEEEDDDEDGDNQVVPWSYPSSSTPPPPPTLTTSSSEDEISAGAGGASKRRRDYGCGDLDSDDEIECSSALQATRSCFNDEATSSSSRRPLKQAKVTGRPIQSASIIRDEETCEEELKATAVVRSIQSLQNRGPTDVKDASKIVYGICKMSRDQNR 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41834946 41836608 + Sed0008702.1 Sed07g2635 721499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2635 273 MobiDBLite consensus disorder prediction 194 209 - -
Sed07g2635 273 MobiDBLite consensus disorder prediction 83 179 - -
Sed07g2635 273 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270(InterPro)
Sed07g2635 273 CDD Bbox1_BBX-like 4 45 IPR049808 -
Sed07g2635 273 MobiDBLite consensus disorder prediction 93 129 - -
Sed07g2635 273 MobiDBLite consensus disorder prediction 194 214 - -
Sed07g2635 273 SMART bboxneu5 1 45 IPR000315 GO:0008270(InterPro)
Sed07g2635 273 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 196 - -
Sed07g2635 273 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2635 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0344 Sed-Chr10:2112067 Sed07g2635 Sed-Chr7:41834946 6.80E-24 transposed
Sed04g3136 Sed-Chr4:42166308 Sed07g2635 Sed-Chr7:41834946 2.00E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g337 . . . . . . . . Cmo16g00871 . . . . . Sed07g2635 . . Bhi09g01975 Tan01g4472 Cmetu04g2261 . Hepe01g1339 Mch11g0247 . . . . . . . . . . . . . . . Cme06g02317 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39204 PF00643 zf-B_box 2.50E-06 No_clan Sed TR