Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2636 ATGGTGCTGAACCAATCCACATTCAAAAGGGATGTTTTGTTGTGGAAAGAAACTGAGAAAGCCTGGAGCTGTATGAAAGGTTTTCGGCCCCGGGTGCCGGAGAAATGGAGTGTCATGGATTATAGGGAAGGGTGTGTTAGAAATAAGCCTCTAAATTGCTCTGATGAAGTTGGGTTTGCTAAGTTTACTTGGATGAAATTGCCTGACACTAAACTGTCTTGGGTTAATGAAAGCATGAGTTTAAGTGAATGCAGGGACAAGTGCTTGAGAGATTGTTCTTGTATGGGGTTTGCCAATACAAATATCAGTGGATCAGGTAGTGGTTGTGCCATTTGGCTTGGTGATCTTATTGATATGAAGGTAGTTCCTAAAGGTGGACAAGACTTGTATGTTCGAATACTCGCTTCTGAGTTAGAGACAAAGAAGACGAGTTCGGTTGTCATTGGCACTTCAGTTTCATTTTCTGTTCTTATAATCGTTGGACTTCTTTTCGTTGGATTTTACATCATCAGAAGCAGGAAAAGGCTCAAAGCAGTCCCTGAAAGCTTATACATGTTCAACTTCCAAGTAAGGAACTTGAAGGGAAAGACTTGGAGCTTCCACTATTTGAATTATCAGAAATATCAAATGCCACAGAAAATTTTTCAAACTCAAACAAGCTTGGAGAAGGCGGGTAGACTTGCAAATGGACAAGAGATTGCTGTAAAGAGGCTTTCTTGCCATTCGAAACAAGATTCTGCTAGAAGAGGACTTTTAGATTGGTCGAAGCCGTTTGATATCATATGCGGAATAGCTAGAGGAATTCTTTATCTTCATCAAGATTCTAGATTGAGGATTATTCACAGAGATCTTAAACCGAGCAATGTCTTGCTTGATATTGATATGAACCCGAAAATCTCGGATTTCGGATTAGCTAGAACTTTTGGTGGGGACCAAACAGAAGGAAAGACTAGGAGAGTGGTTGGAACATATGGATATATGGCACCAGAATATGCCATCGATGGACAATTTTCGATAAAGTCCGATGTATTCAGTTTTGGCATTTTAGTATTGGAGATTATAAGTGGAAAGAAAAATAAAGGATTCTATCGTTCAAGTCAAGCGCTTAATCTTATTGGACATGCGTGGAAATTATGGAAAGATGGAAAACCGTTCGAACTGATCGATACGTCCATCAAATATTCATATTCTTCGTCTGAAGTATTGCGATGCGTCCATGTTAGCCTTTTGTGCTTGCAACAACATCGTGATGATCGACCAACCATGTCAAACGTGGTTCGAATGTTAAGTAGTAATAGTGTTTTGGTGCAACCAAAGCAACCAGGATTTTACCTAGAAGGGGACTCAAGTGAAGTGGATTCTCTTTTAGGCAAGAATGAGTCTTATACCAACAATGAATTAACTGTTACTCTCATGGAAGCTAGATAA 1428 39.64 MVLNQSTFKRDVLLWKETEKAWSCMKGFRPRVPEKWSVMDYREGCVRNKPLNCSDEVGFAKFTWMKLPDTKLSWVNESMSLSECRDKCLRDCSCMGFANTNISGSGSGCAIWLGDLIDMKVVPKGGQDLYVRILASELETKKTSSVVIGTSVSFSVLIIVGLLFVGFYIIRSRKRLKAVPESLYMFNFQVRNLKGKTWSFHYLNYQKYQMPQKIFQTQTSLEKAGRLANGQEIAVKRLSCHSKQDSARRGLLDWSKPFDIICGIARGILYLHQDSRLRIIHRDLKPSNVLLDIDMNPKISDFGLARTFGGDQTEGKTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILVLEIISGKKNKGFYRSSQALNLIGHAWKLWKDGKPFELIDTSIKYSYSSSEVLRCVHVSLLCLQQHRDDRPTMSNVVRMLSSNSVLVQPKQPGFYLEGDSSEVDSLLGKNESYTNNELTVTLMEAR 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41842226 41846588 - Sed0015638.1 Sed07g2636 721500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2636 475 Pfam PAN-like domain 53 119 IPR003609 -
Sed07g2636 475 Pfam Protein kinase domain 258 427 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2636 475 Gene3D Transferase(Phosphotransferase) domain 1 237 440 - -
Sed07g2636 475 SMART serkin_6 215 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2636 475 SMART ntp_6 54 133 IPR003609 -
Sed07g2636 475 Pfam Domain of unknown function (DUF3403) 430 475 IPR021820 GO:0004674(InterPro)
Sed07g2636 475 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 235 437 - -
Sed07g2636 475 CDD PAN_AP_plant 50 133 - -
Sed07g2636 475 ProSiteProfiles PAN/Apple domain profile. 53 134 IPR003609 -
Sed07g2636 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2636 475 SUPERFAMILY Protein kinase-like (PK-like) 226 435 IPR011009 -
Sed07g2636 475 ProSiteProfiles Protein kinase domain profile. 97 435 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2636 475 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 245 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2636 Sed-Chr7:41842226 Sed13g1158 Sed-Chr13:14371475 8.70E-115 dispersed
Sed04g3133 Sed-Chr4:42137069 Sed07g2636 Sed-Chr7:41842226 5.30E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79564 PF00069 Pkinase 1.40E-26 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2636 - - - 0.0