Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2646 ATGGACTCTCATCAACTGTTTGAATTTGGGGTTAATAGTGCTGGTATTTCCTATACATCCGTTCCATCTTTGCCCAACACTTTGCTTGGACCCTTGAAATATAATCTAAGAAATTCCCCTTTGCTGGATTCGTCGCATTTTGAGTTCGATTTCGTTGCAGCAACCGTGGGGAGTTATAGTCAGGATCAAGGGAACTCCCCTGAGAATCTGTCTGGATTTAGCCCTTCTTGTAATTCCTCGTTTGAAACCAATAGCTTTAATCAAATAGCATCTTCGTCGTATTTGGATCATTGTGAGGACGAGAGTCAACAATTCTATACGGGGCCGAATACGGTTGTCCACAATGATTGCTCGACCGCGAATATAAGCTACACGATGAAACAGTTGGAGAGTATTCTGATGGGGGGTCTGGATGATGAGGAAGTTGCGAGCAAGCCTGATGCTTCTTTTGTAGAGAGTAGCAGGCAACAGATGATGGGACAGAGGCACTCATGGAACCAGGATCGACATGGTGGGTCGTATTTTGTCGAGTCTCAGACGTCGTCGCCCATGTCGAGAAGCCAGCAATCTGAAACAGTTCACTTGGGGAAACGGCAGAAATCAATGGATGAATCGATGTTGCAGCAGGGAGGATTTCCAGCAGATAATTTGAAAAATTTGCTGATTGCTTGTGCAAAAGCCTTAGCTGAAAACAGGATAGGGGATTTCGATAACTTGGTTGCCAGAACTAGAGGTGCTGTGTCTATCAGCGGAGAACCAATCCAGCGTCTCGGCGCGTACATGGTGGAAGGATTGGTTGCTAGGAAAATGGAATCGGGGGCGAATATATACCGTGCTCTAAACTGTAGAGAGCCTGCAAGTGATGATTTGCTATCTTATATGCATATGCTATATGAAATCTGCCCTTACTTGAAGTTCGGTTACATGGCAGCAAATGGGGCGATTGCCGAAGCTTGCAGAAACGAAGATCGTATCCACATTATAGATTTCCAGATTACTCAGGGGACGCAGTGGTTAACTCTTCTTCAGGCACTGGCAGCACGGCCGAGTGGGGCTCCCCATGTGAGGATAACTGGTATCGACGACCCTGTTTCTAAATATGCCCGTGGCGATGGGTTGGAGGTTGTGGAGAAACGGTTGGCCGAAATATCTAGGAAGTACGGAATACCCGTAGAGTTTCAAGGAGTGCCTGTTTTCGCTCCAGACATCAGGCGTGATATGCTCGACATCAGACCTGGGGAGGCTCTGGCTGTGAACTTCCCGTTGCAACTTCATCATACCCCGGATGAAAGCGTCAACGTGAACAATCCACGCGACGGTCTGCTGAGATTGGTGAAGTCATTATCTCCAAAGGTAGTAACTTTGGTAGAGCAAGAATCAAACACCAACACAGCCCCTTTCTTCCACAGATTTGTGGAAACTTTAGATTACTATTTGGCGATCTTTGAGTCCATTGATGTCACTCTACCAAGGAACAACAAGAAGCGCATCAATGTCGAGCAACATTGTCTGGCAAAAGATATCGTCAACGTCATTGCTTGTGAGGGGATGGAACGAGAAGAGCGCCACGAGCTCTTCGGCAAGTGGAAATCACGGTTGACAATGGCGGGGTTCTCCCAGTTTCCCTTGAGCTCCTATGTCAACTCCGTCATCAAGAGCCTGCTCAGGTGTTATTCGGAACATTACACTCTCGTCGAAAAAGATGGAGCGATGCTGCTTGGATGGAAAAACAGAAACCTGATATCTGCCTCCGCCTGGTATTGA 1764 47.05 MDSHQLFEFGVNSAGISYTSVPSLPNTLLGPLKYNLRNSPLLDSSHFEFDFVAATVGSYSQDQGNSPENLSGFSPSCNSSFETNSFNQIASSSYLDHCEDESQQFYTGPNTVVHNDCSTANISYTMKQLESILMGGLDDEEVASKPDASFVESSRQQMMGQRHSWNQDRHGGSYFVESQTSSPMSRSQQSETVHLGKRQKSMDESMLQQGGFPADNLKNLLIACAKALAENRIGDFDNLVARTRGAVSISGEPIQRLGAYMVEGLVARKMESGANIYRALNCREPASDDLLSYMHMLYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKYARGDGLEVVEKRLAEISRKYGIPVEFQGVPVFAPDIRRDMLDIRPGEALAVNFPLQLHHTPDESVNVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTAPFFHRFVETLDYYLAIFESIDVTLPRNNKKRINVEQHCLAKDIVNVIACEGMEREERHELFGKWKSRLTMAGFSQFPLSSYVNSVIKSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWY 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41913935 41916955 - Sed0027942.1 Sed07g2646 721510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2646 587 ProSiteProfiles GRAS family profile. 208 587 IPR005202 -
Sed07g2646 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 191 586 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed07g2646 587 MobiDBLite consensus disorder prediction 164 204 - -
Sed07g2646 587 MobiDBLite consensus disorder prediction 164 195 - -
Sed07g2646 587 Pfam GRAS domain family 217 586 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2646 Sed-Chr7:41913935 Sed08g2939 Sed-Chr8:40146524 7.20E-135 dispersed
Sed07g2646 Sed-Chr7:41913935 Sed05g0961 Sed-Chr5:7904776 1.10E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39205 PF03514 GRAS 9.80E-128 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2646 K27748 - csv:101216606 951.044