Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2651 ATGACATTTCGACGATTTATGGGTGTTGCAAAAAGGAGATGTTTGGTTGTTCTTGTGATTCTCGTCTGTGTTTCTTTAGCATTTTGTTTGAAGAATCGCGAGGAAGAGGAACTGCTTCTGAGTCACCTAGCTGACCCAATTACTGGGAATGTCAACACAGAGATGGCTGAGCTGTTATTGGTTAAGTGCAACTTGGATTTGTTTCAGTTGACGGAAGCAGATGGTAATGACTCGTGCTCTGAAGAAAGATTCGGAAGCTCAGATGGAATTACTTTTGAATGCCGGATGCTTGCAAAAGAAAAAACAAACAGAATGCTAAGTTCCTTGCACCCCCAGATGAAGCAGGCTCTTTTAGATTGTTTAAGAAAGAATTTTTGTGTCTCTGGGAAAGACTACAATTCTGAAGCTTGGTACACCAGATATCTCGAGTCGGTGCTTTTTATGCCTGGTAGTCTTAGAAGGAAATTAAGTTCTAGATGGCTAGCATCTGATGAAAATTCTTCTAAAAAATCTTCAGGAAAAGATTCTCAAAAAGAAAAGAATCAACAAATCGTTATCATTGCTGTTGTTGGAACAGCAGCAGTGACTTTTATAATTGTAGGTCTGCTCTTTTTATGCTATAATAAGAGTGGCTCCAGAGCTAAGAAAAATGACGAAAATAATGAAAGGCCTCTCCTATGCTTGAGCTTAAATTCAGGTTCTTCGCCCAAGTCATCTGTATTTGGGGGTTCTATGAAGGGAGGCATGCTCGTGAATCAATCATCTAGCTTGAGTCTCCATCAGAGAAATTCATCGTTGGATGGTGGCTTGCTTGTTGTCTCTGATGGTGCACGCACTTCGATGCACGGACGTCCATCTTTTGGAGCTGCCGGAATTGCCAATAATTCATCTTTTGGATCAATCTATGTGGCTGGTGATACTAATAACATGCTGCCACCTCCTCCGGGAGCAGTGCCAGTCACCACAGAGATTATACCTCCTCTGAAGCCTCCTCCTGGTAGGGCTGTTCCCCTGCCTCCTGAACCCACTTCGTCTTTTAAACCTACATCTATCACGGCTCCTCTTCCACCGCCATCGAGCACGGCTCCTCCTCCTCCATCGAGCATGGCTCCTCCTCCACCTCCATCCAGCATGGCTCCTCCTCCACCTCCACCACCAAGAGCTCCGGGAAATTCAGGTCGCTCTCCTGGACCTCCTCCACCACCTGTGCCAGGCAACAATGCAGGCCCTCGCCCACCACCACCTCCCAAAAGCGGTTCTGGTCCCCCTCGGCCGCCTCCACCCAAAGGTGCAAATGCACCTCGAGCTCCAAAACCTTTAGGAGGACGTGATGATGAAGATTTGGACGAGTCGGGTGTTCCTAAAGCCAAATTGAAACCATTTTTCTGGGATAAAGTTCTTGCAAACCCTGATAATACCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACTCCGGTTGATAAAAACAAAAGTGAAGGCAAGAAGGAGTCGTCATCACAAGATCCTGTGCACCAGTTTATTCAGATCATTGATTCAAAGAAAGCACAAAATCTGTCCATTCTTCTTCGGGCACTAAATGTGACAAAAGAAGAAGTTTGTGATGCGCTTCATGAAGGATCTGAACTTCCTGGTGAACTTCTTGAGAACTTACTGAGGATGGCACCAACACCAGAAGAAGAACTCAAGCTTAGACTGTTTAGTGGGGACGTTTCTCAACTCGGAAATGCTGAGCGGTTCCTTAAATGTTTGGTCGATATTCCCTTTTCGTTCAAAAGGTTGGAATCGCTGCTTTTCATGGGCACTATTCAGGAAGACATCGCCATCACTAACGAGTCCTTCCAGAACTTGGAGGTTGCCTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAAATTCTAGAAGCTGTTCTTAAGACGGGTAACCGGATGAACAATGGAACTTTTCGAGGTGGTGCTCAAGCATTTAAATTGGACACTCTCTTAAAGTTGTCAGATGTGAAAGGGAAAGATGGCAAGACTACACTCTTGCACTTTGTAGTCCAGGAGATAATTCGCACAGAAGGTATAAGAGCTGCCCGGAATGCCACAGGAAGCCAGAGCTTCTCGAGTAGCTCGACAAGGGATATGATGGACGGAACTACTAGCAACACAGAAGAGCATTACAGTACCCTGGGTCTTGAAGTCGTCTCGCTGTTGAGTGGCGAACTTCAGAATGTGAAGAAAGCAGCAACCATAGATGCTGATGCCTTGACTGGAACTGCTTCAAAACTTGGCCATGGACTCTTAAGGACAAGAGATTTTCTGAACAAAGACTTGCAGGATCTAGATGAAGAGAGTCGCTTTCACGAAAAACTGAAAAGCTTTGTGCAGGTTGCTGAGGTTGAAATCATGGCCCTTCTGAAGGAAGAAAAAAGAATCATGGAAATGGTGAAAAGCACGGGCGATTACTTCCACGGAAGTGCAGGGAAAGACGAGGGGTTACGGTTGTTTGTAATCGTGCGAGATTTCTTGATAATGATAGATAAAATATGCCGAGAAATAAAGGATGCACAGAGGAAGAAGCTGCCGAAGGGGCACAGAAAGGTAGCGTCATCGTCAGATATCACTCCTCCCTCTTCAGCTTCCGTTGCTCCTGATTTACGACCTTCGCCTTCTTCCGATCTGAATCAGCTGATCTTCCCAGCAATTGCTGATCGTCGCCCGACTGCTGACTCAAGTTCAGATGAGGATAGCCCATAG 2781 45.6 MTFRRFMGVAKRRCLVVLVILVCVSLAFCLKNREEEELLLSHLADPITGNVNTEMAELLLVKCNLDLFQLTEADGNDSCSEERFGSSDGITFECRMLAKEKTNRMLSSLHPQMKQALLDCLRKNFCVSGKDYNSEAWYTRYLESVLFMPGSLRRKLSSRWLASDENSSKKSSGKDSQKEKNQQIVIIAVVGTAAVTFIIVGLLFLCYNKSGSRAKKNDENNERPLLCLSLNSGSSPKSSVFGGSMKGGMLVNQSSSLSLHQRNSSLDGGLLVVSDGARTSMHGRPSFGAAGIANNSSFGSIYVAGDTNNMLPPPPGAVPVTTEIIPPLKPPPGRAVPLPPEPTSSFKPTSITAPLPPPSSTAPPPPSSMAPPPPPSSMAPPPPPPPRAPGNSGRSPGPPPPPVPGNNAGPRPPPPPKSGSGPPRPPPPKGANAPRAPKPLGGRDDEDLDESGVPKAKLKPFFWDKVLANPDNTMVWHQIKAGSFQFNEEMIETLFGYTPVDKNKSEGKKESSSQDPVHQFIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGSELPGELLENLLRMAPTPEEELKLRLFSGDVSQLGNAERFLKCLVDIPFSFKRLESLLFMGTIQEDIAITNESFQNLEVACKELRSSRLFLKILEAVLKTGNRMNNGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAARNATGSQSFSSSSTRDMMDGTTSNTEEHYSTLGLEVVSLLSGELQNVKKAATIDADALTGTASKLGHGLLRTRDFLNKDLQDLDEESRFHEKLKSFVQVAEVEIMALLKEEKRIMEMVKSTGDYFHGSAGKDEGLRLFVIVRDFLIMIDKICREIKDAQRKKLPKGHRKVASSSDITPPSSASVAPDLRPSPSSDLNQLIFPAIADRRPTADSSSDEDSP 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41953739 41965104 - Sed0027510.1 Sed07g2651 721515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2651 926 ProSiteProfiles Formin homology-2 (FH2) domain profile. 448 880 IPR015425 -
Sed07g2651 926 MobiDBLite consensus disorder prediction 868 926 - -
Sed07g2651 926 MobiDBLite consensus disorder prediction 313 344 - -
Sed07g2651 926 Pfam Formin Homology 2 Domain 454 853 IPR015425 -
Sed07g2651 926 MobiDBLite consensus disorder prediction 313 453 - -
Sed07g2651 926 Coils Coil 779 799 - -
Sed07g2651 926 MobiDBLite consensus disorder prediction 879 904 - -
Sed07g2651 926 PANTHER FORMIN-RELATED 163 923 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Sed07g2651 926 SMART it6_source 448 869 IPR015425 -
Sed07g2651 926 MobiDBLite consensus disorder prediction 351 434 - -
Sed07g2651 926 SUPERFAMILY Formin homology 2 domain (FH2 domain) 381 868 - -
Sed07g2651 926 Gene3D Formin, FH2 domain 453 881 IPR042201 -
Sed07g2651 926 MobiDBLite consensus disorder prediction 439 453 - -
Sed07g2651 926 MobiDBLite consensus disorder prediction 709 731 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4182 Sed-Chr1:70429283 Sed07g2651 Sed-Chr7:41953739 1.20E-94 dispersed
Sed05g3088 Sed-Chr5:41093529 Sed07g2651 Sed-Chr7:41953739 3.60E-137 dispersed
Sed06g0275 Sed-Chr6:2340117 Sed07g2651 Sed-Chr7:41953739 9.90E-94 dispersed
Sed07g2651 Sed-Chr7:41953739 Sed12g1974 Sed-Chr12:30723772 3.90E-26 dispersed
Sed06g1596 Sed-Chr6:40779593 Sed07g2651 Sed-Chr7:41953739 1.20E-76 transposed
Sed08g1729 Sed-Chr8:32246919 Sed07g2651 Sed-Chr7:41953739 3.10E-76 transposed
Sed04g3176 Sed-Chr4:42484752 Sed07g2651 Sed-Chr7:41953739 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2651 K28090 - csv:101213072 776.933