Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2654 ATGGTTTCTCCTGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGATGACATCCCTGTATCCGATGCGAATTTCCCAGTCACGAGTTCAAGCTTCCCGTGGGCTATTCAATCCTTTAATGGCGCCCCTGATGTTGGTGTGGAGATTGATGGATCATCAGAAAATCTGGACACCCGTCTAGAATCTGGCTCTAAGAAGAGGGTCAGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGAGAGAGGCTCAATGACAAGTTTCTGGAACTGGGTTCCATTTTGGATCCTGAAAGACCACCAAAAACCGACAAGGCTGCAATGTTAGTTGATGCCGTTCGAATGGTGAACCAGTTGCGTAGCGAAGCCCAAAAACTAAAGGAATCAAATTCTGGTCTCCAGGATAAGATTAAAGAGTTGAAGGCCGAGAAGAACGAGCTTCGCGACGAGAAGCAGAGGCTGAAGGCAGACAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATACATGCTCGCCCTGGCTTCTTACCTACACCAATCCCTACATTTGCTGCACAAACTCAAGCTCCTGGCAATAAGCCAGTTCCTTTCATTGGTTACCACCCAGGTGTAGCCATGTGGCAATTCATGCCACCCGCTGCAGTGGACACGTCACAGGACCATGTACTCCGGCCACCTGTTGCTTAA 705 47.94 MVSPENPNWLFDYGLIDDIPVSDANFPVTSSSFPWAIQSFNGAPDVGVEIDGSSENLDTRLESGSKKRVRSDSCSGSSSKACREKLRRERLNDKFLELGSILDPERPPKTDKAAMLVDAVRMVNQLRSEAQKLKESNSGLQDKIKELKAEKNELRDEKQRLKADKEKLEQQVKSIHARPGFLPTPIPTFAAQTQAPGNKPVPFIGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41976708 41979532 + Sed0008257.1 Sed07g2654 721518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2654 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983(InterPro)
Sed07g2654 234 MobiDBLite consensus disorder prediction 56 80 - -
Sed07g2654 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Sed07g2654 234 CDD bHLH_AtILR3_like 80 155 - -
Sed07g2654 234 Gene3D - 66 124 IPR036638 GO:0046983(InterPro)
Sed07g2654 234 PANTHER BHLH TRANSCRIPTION FACTOR 8 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Sed07g2654 234 FunFam Transcription factor bHLH34 66 124 - -
Sed07g2654 234 Coils Coil 116 178 - -
Sed07g2654 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Sed07g2654 234 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 178 - -
Sed07g2654 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1399 Sed-Chr2:50177074 Sed07g2654 Sed-Chr7:41976708 3.30E-27 dispersed
Sed07g2654 Sed-Chr7:41976708 Sed14g1194 Sed-Chr14:21229329 7.60E-11 dispersed
Sed01g1427 Sed-Chr1:10517660 Sed07g2654 Sed-Chr7:41976708 2.10E-45 transposed
Sed05g3087 Sed-Chr5:41083797 Sed07g2654 Sed-Chr7:41976708 2.40E-49 transposed
Sed04g3178 Sed-Chr4:42510963 Sed07g2654 Sed-Chr7:41976708 1.40E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39206 PF00010 HLH 3.40E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2654 - - - 0.0