Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2665 ATGGTTGCCTCCACCGCGCTGAACTGCAAAATCTCCACCATTTCGCCGCCGTCTTCACATCCCAATTCCAAGATTTCTTCATCTTTTTCACGATTTCCGGCCAATTTCCGGCGAGTTTTGCCCCATCCTTCTCCGGTTTTCCGGTCCGCCGCCGTCTCCTGCACCGTAACTCGGGAGCCGTCTCTGGCAATGGAGGACAATAGAATCCAGAGTTTGAGTCTGGAGCAGAGACCCGATTCGTTTGGGAGGTTTGGCCGATTCGGGGGAAAGTATGTTCCCGAGACCCTAATGCACGCTCTGTCCGAGCTTGAAACTGCTTTTCATTCCCTTGCTAGCGACCAACAATTTCAGAAAGAGCTGGATGGGATTTTGAGAGACTACGTTGGGAGAGAGAGCCCTCTATACTTTGCAGAGAGGCTTACCGAGCACTATAGACGTCCCAATGGTGAGGGGCCTCATATTTTCCTGAAGAGAGAAGATCTTAACCACACAGGGGCTCACAAAATTAACAATGCTGTTGCCCAAGCTTTGCTTGCTAAGCGCTTGGGAAAGAAACGAATTATTGCTGAAACAGGCGCCGGTCAGCATGGGGTTGCAACTGCAACTGTTTGTGCTAGGTTTGGACTAGAATGTATCATCTACATGGGCGCTCAAGATATGGAAAGACAAGCTCTCAATGTGTTCAGAATGCGGCTTCTTGGGGCTGAGGTTAGAGCAGTTCATTCTGGTACTGCCACACTGAAGGATGCTACTTCAGAAGCTATAAGGGACTGGGTGACTAATGTAGAGACTACCCATTATATATTAGGATCTGTTGCTGGGCCCCATCCATATCCCATGATGGTCAGAGATTTTCATGCAGTGATTGGTAAAGAAACAAGAAAACAGGCCTTGGAGAAGTGGGGAGGGAAGCCAGATGTTCTAGTGGCTTGTGTTGGAGGAGGTTCAAATGCTATGGGACTATTTCATGAGTTTGTTAACGACGAAGATGTTAGTTTGGTTGGCGTAGAGGCTGCAGGTTTTGGCTTGGATAGTGGCAAGCATGCAGCAACCCTGACCAAAGGGGAAGTTGGAGTTCTACATGGAGCCATGAGTTACTTACTACAGGATGATGATGGACAAATAATTGAACCTCACTCAATCAGTGCAGGTTTGGATTACCCTGGCGTTGGACCAGAGCATAGTTATTTGAAAGATTTAGGTCGTGCCGAGTACTACAGTGTCACCGATGATGAGGCTCTGGAAGCTTTCAAGAGATTGTCAAGGTTAGAGGGCATAATACCAGCTCTGGAGACATCTCATGCTCTGGCTTATCTCGAGAAGCTGTGCCCGAACCTCGCGGATGGAACAAAGGTCGTGCTTAGCTGCAGTGGCAGAGGGGACAAGGATGTTCACACAGCGATCAAGTATTTGCAAGTTTGA 1422 48.45 MVASTALNCKISTISPPSSHPNSKISSSFSRFPANFRRVLPHPSPVFRSAAVSCTVTREPSLAMEDNRIQSLSLEQRPDSFGRFGRFGGKYVPETLMHALSELETAFHSLASDQQFQKELDGILRDYVGRESPLYFAERLTEHYRRPNGEGPHIFLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVNDEDVSLVGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSYLKDLGRAEYYSVTDDEALEAFKRLSRLEGIIPALETSHALAYLEKLCPNLADGTKVVLSCSGRGDKDVHTAIKYLQV 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42102081 42106338 - Sed0022292.1 Sed07g2665 721529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2665 473 PIRSF Trp_syn_beta 66 473 IPR023026 GO:0000162(InterPro)|GO:0004834(InterPro)
Sed07g2665 473 Gene3D - 84 286 IPR036052 -
Sed07g2665 473 FunFam Tryptophan synthase beta chain 131 283 - -
Sed07g2665 473 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 78 471 IPR036052 -
Sed07g2665 473 FunFam Tryptophan synthase beta chain 284 464 - -
Sed07g2665 473 Gene3D - 129 464 IPR036052 -
Sed07g2665 473 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 161 175 IPR006653 GO:0004834(InterPro)|GO:0006568(InterPro)
Sed07g2665 473 NCBIfam tryptophan synthase subunit beta 82 470 IPR006654 GO:0004834(InterPro)|GO:0006568(InterPro)
Sed07g2665 473 Pfam Pyridoxal-phosphate dependent enzyme 130 458 IPR001926 -
Sed07g2665 473 CDD Trp-synth_B 99 466 IPR006654 GO:0004834(InterPro)|GO:0006568(InterPro)
Sed07g2665 473 PANTHER TRYPTOPHAN SYNTHASE-RELATED 65 472 IPR023026 GO:0000162(InterPro)|GO:0000162(PANTHER)|GO:0004834(PANTHER)|GO:0004834(InterPro)|GO:0005737(PANTHER)
Sed07g2665 473 Hamap Tryptophan synthase beta chain [trpB]. 77 471 IPR023026 GO:0000162(InterPro)|GO:0004834(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2665 K01696 - - csv:101220286 866.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2665 Sed-Chr7:42102081 Sed08g2349 Sed-Chr8:36822385 6.80E-152 dispersed
Sed04g3193 Sed-Chr4:42618050 Sed07g2665 Sed-Chr7:42102081 4.70E-254 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g472 Blo03g00575 Blo03g01443 Bda07g00347 Bda09g00390 . Bpe08g01133 . . . . Cma01g01141 . . . Sed07g2665 . Cpe02g00759 Bhi09g01922 Tan01g4526 Cmetu04g1540 . Hepe01g1295 Mch11g1169 . . . . . . . . Cone6ag0078 Cone9ag0093 . . Lsi04g01224 . . . . . . . Bpe11g00532 . . Bma14g00349 . Cmo01g01193 . . . . Car16g00553 . . . . . . . . . Cla05g01511 Cam05g1626 Cec05g1630 Cco05g1658 Clacu05g1611 Cmu05g1511 . . . . Cme04g00849
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008087 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35