Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2681 ATGGTTGAATCAGACTTCCAGATCCCATCCGCTTTCGATCCATTCGCCGACGCAAAGGATTCGGATGCCCCCGGGGCAAAAGAGTATGTTCATATCCGCGTGCAGCAGAGGAATGGTAAGAAGTGCTTGACGACAGTGCAAGGTCTGAAGAAGAACTTGAGCTACGAAAAGATTCTGAAAGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTGGTTCAAGACAAAGAATTGGGGAAGATAATTCAGCTTCAAGGCGACCAGCGCAAAAACGTCTCTCAATTCCTGGTTCATGCTGGAGTTGCCAAGAAGGATCAAATCAAAATCCATGGATTTTAA 339 45.72 MVESDFQIPSAFDPFADAKDSDAPGAKEYVHIRVQQRNGKKCLTTVQGLKKNLSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVHAGVAKKDQIKIHGF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42206324 42208374 + Sed0016288.1 Sed07g2681 721545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2681 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743(InterPro)
Sed07g2681 112 NCBIfam translation initiation factor SUI1 7 112 IPR005874 GO:0003743(InterPro)
Sed07g2681 112 MobiDBLite consensus disorder prediction 1 22 - -
Sed07g2681 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 3 112 - GO:0003723(PANTHER)
Sed07g2681 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743(InterPro)
Sed07g2681 112 FunFam Eukaryotic translation initiation factor SUI1 2 112 - -
Sed07g2681 112 Pfam Translation initiation factor SUI1 27 101 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed07g2681 112 Gene3D - 1 112 - -
Sed07g2681 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed07g2681 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2008 Sed-Chr5:33341144 Sed07g2681 Sed-Chr7:42206324 8.10E-43 dispersed
Sed07g2681 Sed-Chr7:42206324 Sed04g3290 Sed-Chr4:43283102 1.80E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2681 K03113 - csv:101202908 215.698