Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2683 ATGAGTTTGTATTTTTTGTTTGTGAAAACTTTTATGGAAACCCTCAAGCTTCTTATGTCTATGATACCTTCCACATTACAACAATGGTGGTTGGTTGAGTTTGAGGAGGAGGTTTTGAATAAAGCTCTTCGATTCCTTGTCGAATCGCTGAAGACAATCGCTCTCGCTTTGTTTCTATGCCTTCTCGCTCTAGTTGGTGCATTTGTGGGGACAATATTCGGAGCTTTCAACGGCCATGGCACCGGCATAGGCACGATTGCCGGTGCTGCCGTAGCCCTTCAACTGTTGAACTACACCATGTTTGAGCATAGACATTCTTTTTCAAAGGAAGCAATAATGGAGAGTTTAATGGATGGTAAGGGCTTGATGAACTGGGCGAGCAACTTCTCCGAGTATATGGCTCGAGAGATATCGGACTTCATCGACATTGCGGTCGCGGTCGCCGGAGAAAGTTGTGTGGAAGGAATGGCTATGGAGAGTGTTCAAAAGTTGCCTATTTGTGAATATGATCATAGCAAGATGGTCAACTCTATTTCTTGTTCTATTTGCTTAGAGGATTTTGAAGATGGGGAAATTGGTAGAAAACTTCCAAATTGTGATCATTTCTTTCATGTGGATTGCATTGATCAATGGCTATACTTGCATGGTTCTTGCCCAATTTGTAGAAAAAATATTTGTATTTAA 684 41.52 MSLYFLFVKTFMETLKLLMSMIPSTLQQWWLVEFEEEVLNKALRFLVESLKTIALALFLCLLALVGAFVGTIFGAFNGHGTGIGTIAGAAVALQLLNYTMFEHRHSFSKEAIMESLMDGKGLMNWASNFSEYMAREISDFIDIAVAVAGESCVEGMAMESVQKLPICEYDHSKMVNSISCSICLEDFEDGEIGRKLPNCDHFFHVDCIDQWLYLHGSCPICRKNICI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42217051 42219776 + Sed0027038.2 Sed07g2683 721547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2683 227 CDD RING-H2_EL5-like 179 222 - -
Sed07g2683 227 SUPERFAMILY RING/U-box 161 225 - -
Sed07g2683 227 Pfam Ring finger domain 179 222 IPR001841 -
Sed07g2683 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 226 IPR013083 -
Sed07g2683 227 SMART ring_2 180 221 IPR001841 -
Sed07g2683 227 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 40 224 IPR044523 -
Sed07g2683 227 ProSiteProfiles Zinc finger RING-type profile. 180 222 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2683 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1082 Sed-Chr1:8175728 Sed07g2683 Sed-Chr7:42217051 2.60E-10 dispersed
Sed07g2683 Sed-Chr7:42217051 Sed09g0253 Sed-Chr9:2029102 1.10E-14 dispersed
Sed07g2682 Sed-Chr7:42217051 Sed07g2683 Sed-Chr7:42217051 2.60E-86 tandem
Sed07g2683 Sed-Chr7:42217051 Sed07g2684 Sed-Chr7:42217051 2.80E-47 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g510 Blo03g00558 . Bda07g00363 . . . . . . . Cma01g01131 . . Car09g00867 Sed07g2683 Cpe06g00769 Cpe02g00771 Bhi09g01644 Tan01g4553 Cmetu01g1527 . Hepe01g1276 Mch11g1190 . . . . . . . . . . . . Lsi02g01904 Csa07g01091 . . . . . . Bpe11g00550 . . . . Cmo01g01181 Cmo09g00952 . . . Car16g00541 . . . . . . . . . Cla09g01009 Cam09g1067 Cec09g1067 Cco09g1085 . . Cre09g1030 . . . Cme01g01045
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014791 1 0 1 2 1 0 1 0 0 0 0 0 1 1 1 0 0 2 1 0 1 0 1 0 0 0 0 2 0 1 17