Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2703 ATGGCATATACTCTGGAGTCATGGATGAAGGAGCACAATGAAGCTTTGAAACTCTCTGAAGATATCAATGGCATGATTGCTGAGAGAAATTCACTGGCCAATTCGGAAGCTCAGCGTCAAGCCTCGGCTATACGCAGGAAGATCACGATATTGGGTACTCGACTTGATACCCTGCAGACTCAGTTACCCAAGATTCAAGGAAAGCAGCCAATACCAGAGAAAGAGATGAATCGCCGCAGGGACATGATTGGGAATTTGAGATCAAAAGCTAACCAGATGGCTTCAGCTTTGAACATGTCGAACTTTGCAAACCGTGATAGCTTACTCGGTTCAGAAATAAAGCCAGCGGATGTTATGAGCAGAACAACAGGCCTGGACAACCAAGGCCTAGTTGGGTTTCAACGACAAATTATGAGAGAGCAAGACGAAGGGCTCGAGGAACTGGAAGGGACTATAATGAGCACAAAACATATAGCATTGGCTGTCAATGAAGAACTTACACTTCACACGAGACTTATTGATGATTTAGATGAACATGTCGATGTTACAGATTCACGATTGCGGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAGCGGACCAAGGGCGGTTGCACTTGCATGTCGATGATTTCATCGGTTGTCGGGATTGTCGTACTTATCACTGTTGTATGGTTACTCATCAAGCATTTGTAA 696 44.83 MAYTLESWMKEHNEALKLSEDINGMIAERNSLANSEAQRQASAIRRKITILGTRLDTLQTQLPKIQGKQPIPEKEMNRRRDMIGNLRSKANQMASALNMSNFANRDSLLGSEIKPADVMSRTTGLDNQGLVGFQRQIMREQDEGLEELEGTIMSTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMISSVVGIVVLITVVWLLIKHL 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42311331 42314326 + Sed0002435.2 Sed07g2703 721567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2703 231 CDD SNARE_Qc 138 195 - -
Sed07g2703 231 FunFam syntaxin-51 isoform X2 137 199 - -
Sed07g2703 231 Pfam SNARE domain 172 223 IPR000727 -
Sed07g2703 231 PANTHER SYNTAXIN 14 209 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed07g2703 231 Gene3D - 137 199 - -
Sed07g2703 231 SMART tSNARE_6 130 197 IPR000727 -
Sed07g2703 231 SUPERFAMILY SNARE fusion complex 126 197 - -
Sed07g2703 231 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 135 197 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3695 Sed-Chr4:45866744 Sed07g2703 Sed-Chr7:42311331 8.10E-106 dispersed
Sed07g2703 Sed-Chr7:42311331 Sed07g2705 Sed-Chr7:42311331 7.20E-123 dispersed
Sed07g2702 Sed-Chr7:42311331 Sed07g2703 Sed-Chr7:42311331 7.20E-123 tandem
Sed07g2703 Sed-Chr7:42311331 Sed07g2704 Sed-Chr7:42311331 7.20E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2703 K08503 - csv:101208669 379.793