Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2717 ATGTGTTCTTCTTCTTTTGTTCCTTTCCTTGTGCTGTTTTCTCTGCTTCTTCACTCGTTTGTAACGCCGGTCTCTGCTCAGAAATCTAATAATACTTCTCCATGGAAGACTCTGAGTGGAGGGAAGCCATTTGTTGTAGCTCGCGGTGGATTTTCAGGGCTGTTTCCTGATTCGAGCGGGAGTGCTTACAGTTTTGCAAATACTTTTAGTGTTTATGGTGTGATCTTATGGTGCGATGTGCAGTTAACTAAAGATGGAGTTGGAATTTGTCTCCCGGATCTGAGGCTTGACAATGGCACTGACGGTTTGAATGTTCTGGGGGCAAATCGCAGCAGTGTGCATCTTGTTAATGGAGTTCGTACTAAGGGATTGTTTACTGTCGATTTCAGTTTCGAGGAACTCGAAAATGTTACTCTTACTCAAGGTATCTATTCTAGACCTAACCAGTTTGATGGCAATGAATTTCTTATTCTCACTCCGGAAGATGTGATCAAGCAGGTCAAGCCATTAAGACTTTGGTTGAATGTTCAGCATAATGCATTCTACGCTCAACAAAACTTGAGCATGAGAAACTTTGTACTCTCTGTAACCAAACGCATCGCTGTTAACTATATATCATCGCCAGAGATGGGATTTCTTAGAAGTATAGCTTCAAGAATTAATCCTAACACAACAAAGTTGATCTTTCGGGTTTTACGACCAACTGATATCGAGGTTACAACTAATCAGACTTATGATTCTCTCTTACGCAATCTCACTTTCATTAAGACATTTGTTTCTGGAATTCTTGTTCCTAAGACTTATATATGGCCCATTGATAAAGATGGTTACATACGACCAGCAACCTCTCTTGTTTCTGATGCTCATAAAGCAGAGCTGGAGGTTTTTGCATCAGAGTTCAATAATGACGCTCTAGTAAGCTACAACTACAGTTATGATCCCATTACTGAATACCTGTCTTACATTGACAATGGTAATTTTTCAGTTGATGGTGTGCTTACTGATTTCCCAATTAGTTCATCGGCAGCTATCGGTTGTTTTGCCCATTTGGATGATAAGGCAAAAGGTGAAGACAAGCCTTTGGTTATTTCCAAATATGGAGCCAGTGGAGACTTTCCTGCTTGCACAGACTTGGCATATTCCAACGCTATTTTAGATGGTGCAGAAGTGATTGATTGTCCTGTTCAAATGTCAAAAGATGGAACACCATTTTGCATGAACTCAATCAATCTTATAAATAGCACAACAATTGTTCAAACATCATTCAGTAATCGTTCAAAAAAAATTCCGGAAATTAGTCCTAACGACGGAATCTTTTCTTTTGACTTAACATGGGAAGAGATTCAAGGCCTGACCCCATCAATATTGAACCCTTATTTTAGTTATTCGTTGTACCGAAACCCAAGATTCCGAAACAGCGGGAAATTCTTAACGCTATCTGATTTCTTGGCCTTGGCAAAGAATGCTAGCTCTCTTTCTGGTGTCTTGATCCGTATTAAGAATGCTGCCTACCTTGTTAAGGAGCAGGGCTTAAGTATAACCGATGCGGTCCTTGATTACTTGAGCAAAGCTGGTTATGATAAACAGACAGCCCTGAAAGTATTGATTCAGTCTCCAAATAGCTCCGTTCTAATGAAATTTAAAGAGAAAAATAAAGATTACGAGCTTGTTTATGAAGTGGATGAGTCAATTGGTGATGTGCTTAAGAAAACTGCTGAGGTCATCAAGAGTTTTGCTGACTCTGTGACAATCAGCAAGGACTCTGTCTATTCTCAAAATCAGCTATTTCTCAATTTATCTACAAATGTTGTGAAGGAGCTGCGATCAGCTAACCTCTCTATTTATGTGGAAACCTTCAGCAATGAATTTGTCTCTCAAGCATGGGATTTCTTCTCAGATGCAACATCAGAGATCAACACATATGCCATGGAAGCCATGATTGATGGAGTCGTCACCGACTTTCCGAAGACAACTGCTAGATATAAAAAGAACCGATGTTTAACAATGATAGAATCACCTGATTACATGAATCCTGTCTGGCCTGGTAGCTTGTTGCAAGAAGTTACTAAGGAGTACATGCCTCCACAAAAACCTCCGAGCCCGACTCTCGATGACGAAGACATAGCCGAGCCACCGTTGCCTCCGGTCTCTAGTGCAGCACATTCAGCTCATTCACGCAATGGACAGCCTAAGCTTGGAGCTTGGAAAGACTTCTTGCCTTTGAACCTTGCCATACTTTGCATTGCTCTTCTTCCATTCTGA 2262 40.72 MCSSSFVPFLVLFSLLLHSFVTPVSAQKSNNTSPWKTLSGGKPFVVARGGFSGLFPDSSGSAYSFANTFSVYGVILWCDVQLTKDGVGICLPDLRLDNGTDGLNVLGANRSSVHLVNGVRTKGLFTVDFSFEELENVTLTQGIYSRPNQFDGNEFLILTPEDVIKQVKPLRLWLNVQHNAFYAQQNLSMRNFVLSVTKRIAVNYISSPEMGFLRSIASRINPNTTKLIFRVLRPTDIEVTTNQTYDSLLRNLTFIKTFVSGILVPKTYIWPIDKDGYIRPATSLVSDAHKAELEVFASEFNNDALVSYNYSYDPITEYLSYIDNGNFSVDGVLTDFPISSSAAIGCFAHLDDKAKGEDKPLVISKYGASGDFPACTDLAYSNAILDGAEVIDCPVQMSKDGTPFCMNSINLINSTTIVQTSFSNRSKKIPEISPNDGIFSFDLTWEEIQGLTPSILNPYFSYSLYRNPRFRNSGKFLTLSDFLALAKNASSLSGVLIRIKNAAYLVKEQGLSITDAVLDYLSKAGYDKQTALKVLIQSPNSSVLMKFKEKNKDYELVYEVDESIGDVLKKTAEVIKSFADSVTISKDSVYSQNQLFLNLSTNVVKELRSANLSIYVETFSNEFVSQAWDFFSDATSEINTYAMEAMIDGVVTDFPKTTARYKKNRCLTMIESPDYMNPVWPGSLLQEVTKEYMPPQKPPSPTLDDEDIAEPPLPPVSSAAHSAHSRNGQPKLGAWKDFLPLNLAILCIALLPF 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42373583 42382130 + Sed0001590.1 Sed07g2717 721581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2717 753 Gene3D Phosphatidylinositol (PI) phosphodiesterase 358 662 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed07g2717 753 Gene3D Phosphatidylinositol (PI) phosphodiesterase 41 342 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed07g2717 753 MobiDBLite consensus disorder prediction 692 726 - -
Sed07g2717 753 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 41 343 - -
Sed07g2717 753 SUPERFAMILY PLC-like phosphodiesterases 42 338 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed07g2717 753 CDD GDPD_SHV3_repeat_1 43 343 - -
Sed07g2717 753 CDD GDPD_SHV3_repeat_2 360 661 - -
Sed07g2717 753 Pfam Glycerophosphoryl diester phosphodiesterase family 78 337 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed07g2717 753 Pfam Glycerophosphoryl diester phosphodiesterase family 367 657 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed07g2717 753 SUPERFAMILY PLC-like phosphodiesterases 358 661 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed07g2717 753 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 358 662 - -
Sed07g2717 753 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 9 730 - GO:0008889(PANTHER)
Sed07g2717 753 ProSiteProfiles GP-PDE domain profile. 360 662 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Sed07g2717 753 ProSiteProfiles GP-PDE domain profile. 43 344 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0903 Sed-Chr10:6959253 Sed07g2717 Sed-Chr7:42373583 9.60E-164 transposed
Sed04g3684 Sed-Chr4:45804623 Sed07g2717 Sed-Chr7:42373583 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2717 - - - 0.0