Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g2718 | ATGGTGGAGAAAGAGAATCAATGTGTTGTTGTTGCAGAGCCTCGTCTTGTGGCTAGAAAGTTTCTGGCTAGGCCTCAACATGAGGGGTTGGGTGCCATTGTTAGAAGAAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTGGTTTTGGATGAATTTTCAGTTACTGCTCCTGCTGGGTTCCCTGATCATCCACATAGAGGATTTGAGACAGTGACCTACATGTTACAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATTAGTGCAGGTGACTTGCAGTGGATGACTGCAGGTAGAGGAATTTTACATTCAGAAATGCCTGCAGCCCATGGAACCCAAAAGGGCCTACAACTATGGATCAACCTCTCTTCCAAGAATAAAATGATTGAGCCAAATTACCAAGAAGTTTTAACCAAGGAAATACCAGAAGCTACAAAAGATGGAGTGAGAGTAAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTAGATTTCACTCTCAAGCCGAAAGCTCATCTCCGCCAGCCGATCCCATCATCCTGGAATGCGTTCGTTTACATTCTAGAAGGTGAAGGCATCTTCGGCAGCTCAAAGGCGACGTCGACGACAGCGCATAACCTTCTTCTGCTCGGGTTGGGGGATGGTTTAGAGGTTTGGAATAAGTCAGCCAAGCCTCTAAGGTTCATTTTGGTAGGAGGTGAACCATTGAATGAACCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAACTATACTAATGGGTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGCAATTTCAATTGGATTCTAA | 909 | 43.78 | MVEKENQCVVVAEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTISAGDLQWMTAGRGILHSEMPAAHGTQKGLQLWINLSSKNKMIEPNYQEVLTKEIPEATKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLRQPIPSSWNAFVYILEGEGIFGSSKATSTTAHNLLLLGLGDGLEVWNKSAKPLRFILVGGEPLNEPVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAAISIGF | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 42384795 | 42389205 | + | Sed0019587.1 | Sed07g2718 | 721582 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g2718 | 302 | CDD | cupin_pirin_C | 177 | 253 | - | - | |
| Sed07g2718 | 302 | Gene3D | Jelly Rolls | 149 | 254 | IPR014710 | - | |
| Sed07g2718 | 302 | FunFam | pirin | 28 | 165 | - | - | |
| Sed07g2718 | 302 | Gene3D | Jelly Rolls | 28 | 280 | IPR014710 | - | |
| Sed07g2718 | 302 | CDD | cupin_pirin_N | 34 | 129 | - | - | |
| Sed07g2718 | 302 | SUPERFAMILY | RmlC-like cupins | 15 | 294 | IPR011051 | - | |
| Sed07g2718 | 302 | PANTHER | PIRIN-RELATED | 7 | 295 | IPR012093 | - | |
| Sed07g2718 | 302 | PIRSF | Pirin | 13 | 293 | IPR012093 | - | |
| Sed07g2718 | 302 | Pfam | Pirin C-terminal cupin domain | 180 | 284 | IPR008778 | - | |
| Sed07g2718 | 302 | Pfam | Pirin | 34 | 127 | IPR003829 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g1057 | Sed-Chr2:47931084 | Sed07g2718 | Sed-Chr7:42384795 | 1.20E-119 | dispersed | |
| Sed07g2718 | Sed-Chr7:42384795 | Sed12g0676 | Sed-Chr12:4047754 | 9.80E-120 | dispersed | |
| Sed07g2718 | Sed-Chr7:42384795 | Sed07g2719 | Sed-Chr7:42384795 | 1.10E-131 | tandem | |
| Sed04g3683 | Sed-Chr4:45797514 | Sed07g2718 | Sed-Chr7:42384795 | 5.50E-163 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g2718 | K06911 | - | csv:101216351 | 555.058 |