Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g2719 | ATGTTACAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATTAGTGCAGGTGACTTGCAGTGGATGACTGCAGGTAGAGGAATTTTACATTCAGAAATGCCTGCAGCCCATGGAACCCAAAAGGGCCTACAACTATGGATCAACCTCTCTTCCAAGAATAAAATGATTGAGCCAAATTACCAAGAAGTTTTAACCAAGGAAATACCAGAAGCTACAAAAGATGGAGTGAGAGTAAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTAGATTTCACTCTCAAGCCGAAAGCTCATCTCCGCCAGCCGATCCCATCATCCTGGAATGCGTTCGTTTACATTCTAGAAGGTGAAGGCATCTTCGGCAGCTCAAAGGCGACGTCGACGACAGCGCATAACCTTCTTCTGCTCGGGTTGGGGGATGGTTTAGAGGTTTGGAATAAGTCAGCCAAGCCTCTAAGGTTCATTTTGGTAGGAGGTGAACCATTGAATGAACCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAACTATACTAATGGGTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGCAATTTCAATTGGATTCTAA | 681 | 43.32 | MLQGSVTHEDFEGHKGTISAGDLQWMTAGRGILHSEMPAAHGTQKGLQLWINLSSKNKMIEPNYQEVLTKEIPEATKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLRQPIPSSWNAFVYILEGEGIFGSSKATSTTAHNLLLLGLGDGLEVWNKSAKPLRFILVGGEPLNEPVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAAISIGF | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 42384795 | 42389205 | + | Sed0019587.2 | Sed07g2719 | 721583 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g2719 | 226 | PANTHER | PIRIN-RELATED | 1 | 219 | IPR012093 | - | |
| Sed07g2719 | 226 | CDD | cupin_pirin_C | 101 | 177 | - | - | |
| Sed07g2719 | 226 | Pfam | Pirin | 1 | 51 | IPR003829 | - | |
| Sed07g2719 | 226 | Pfam | Pirin C-terminal cupin domain | 104 | 208 | IPR008778 | - | |
| Sed07g2719 | 226 | Gene3D | Jelly Rolls | 1 | 204 | IPR014710 | - | |
| Sed07g2719 | 226 | SUPERFAMILY | RmlC-like cupins | 1 | 218 | IPR011051 | - | |
| Sed07g2719 | 226 | PIRSF | Pirin | 1 | 217 | IPR012093 | - | |
| Sed07g2719 | 226 | Gene3D | Jelly Rolls | 73 | 178 | IPR014710 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g3683 | Sed-Chr4:45797514 | Sed07g2719 | Sed-Chr7:42384795 | 1.20E-122 | dispersed | |
| Sed07g2719 | Sed-Chr7:42384795 | Sed12g0676 | Sed-Chr12:4047754 | 7.10E-91 | dispersed | |
| Sed07g2718 | Sed-Chr7:42384795 | Sed07g2719 | Sed-Chr7:42384795 | 1.10E-131 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g2719 | K06911 | - | csv:101216351 | 423.32 |