Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2743 ATGTCCCCTCCGATTTTCCGATCCCGATTCATTTCCTTACTGAAGAATCGCCATGGGCGTCTTATGAGCACCAATCTCGCTTCCAATCCGTCGAAGGATGCGTTCAATGCGTCCCAGAAGCTCGTCTCCGATCAGATTCCACCGGAAGTTCAGGCCAATTCTTCTTCTTCGTCATCTTCCACAAGTTCTCCTTTGAATTTCTTGAAGTATAGTGTTATTGGCGCTCTTACAGGAGCTACTGCGGTTGCTGGTTACGCCAGCTTTGCTTATAGTTATGATGAGATTCAGGAGAAGGCTAAAGCTCTCCGTCGTTCTGCATGTTATACTGCCTCGGACGATGTTTCTGGTGTTGATAAGGTTCAGCGCATGCTCTACTCAACGATAATGACAGTTCCTGTTAAACTAGTTGATGTTTACCTGGATTTGAGGAAGACAATTGAAGAACAAGTTAAAGATTATACTGAACCCATTGCAGAAATGCTTCTTCCAGATTTGCATCCCATGGAACGGCATGTGTTTACGCTTGTTCTAGATCTGAATGAGACTCTAGTGTACTCTGATTGGACGCGAGAAAGAGGTTGGCAGACGTTCAAAAGACCTGGAGTGGATGCTTTCTTGGAACATCTTGCCCAATTTTATGAAATTGTTATATTCTCCGATCAATCAAATATGTATGTTGATCCTGTTATTGATAGGTTGGATACCAAGCATTGCATACGATATAGGTTGTCAAGAGCAGCTACCAAGTACGAGAATGGAAAACATTACAAAGTATGCTATGGATGA 786 43.0 MSPPIFRSRFISLLKNRHGRLMSTNLASNPSKDAFNASQKLVSDQIPPEVQANSSSSSSSTSSPLNFLKYSVIGALTGATAVAGYASFAYSYDEIQEKAKALRRSACYTASDDVSGVDKVQRMLYSTIMTVPVKLVDVYLDLRKTIEEQVKDYTEPIAEMLLPDLHPMERHVFTLVLDLNETLVYSDWTRERGWQTFKRPGVDAFLEHLAQFYEIVIFSDQSNMYVDPVIDRLDTKHCIRYRLSRAATKYENGKHYKVCYG 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42525466 42531318 - Sed0002134.3 Sed07g2743 721607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2743 261 FunFam Mitochondrial import inner membrane translocase subunit TIM50 159 259 - -
Sed07g2743 261 SMART forpap2 171 261 IPR004274 -
Sed07g2743 261 Gene3D - 157 259 IPR023214 -
Sed07g2743 261 Pfam NLI interacting factor-like phosphatase 174 257 IPR004274 -
Sed07g2743 261 SUPERFAMILY HAD-like 160 257 IPR036412 -
Sed07g2743 261 ProSiteProfiles FCP1 homology domain profile. 168 261 IPR004274 -
Sed07g2743 261 PANTHER DULLARD PROTEIN PHOSPHATASE 56 257 IPR050365 GO:0005744(PANTHER)|GO:0030150(PANTHER)
Sed07g2743 261 CDD HAD_FCP1-like 173 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2743 K17496 - - csv:101207617 446.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2741 Sed-Chr7:42525466 Sed07g2743 Sed-Chr7:42525466 1.20E-140 dispersed
Sed07g2743 Sed-Chr7:42525466 Sed10g0206 Sed-Chr10:1192396 2.50E-10 dispersed
Sed07g2742 Sed-Chr7:42525466 Sed07g2743 Sed-Chr7:42525466 1.20E-140 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g648 . . . . . . . . . . Cma01g01081 Cma09g01002 Car01g00956 Car09g00913 Sed07g2743 Cpe06g00810 Cpe02g00817 Bhi09g01749 Tan01g3181 Cmetu01g1982 . . Mch11g1259 . . . . . . . . . . Cone14ag1212 Cone15ag1233 Lsi02g01842 Csa07g00939 . . . . . . Bpe11g00582 . . Bma14g00172 . Cmo01g01127 Cmo09g01002 . . . . . . . . . . . . . Cla09g02063 Cam09g2152 Cec09g2217 . . . . . . Chy01g01165 Cme01g00930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005181 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 4 2 2 41