Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2744 ATGGCTAGCAAAGAAGCAAGACAGCCGCTGCTACCAACAAGGTCTAACAATATCGAAACACAAATAATAGATATTCCCAGAAGCAGAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCTTATACAGACATTACTGGCACCAATACGGCTACTTGTCCAGTTCCCCGTTCAGGATTATTTTTCGGAAATCTACGCCCTAGTTTCAGAAGAGTAGCCTTAGTTTTAATAATGTACTTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGAATCAAGTCAGAGGGGAAAAAACAAACGGAATAGTCGATGCTATTTATTTCACTGTTGTGACAATGACAACCGTCGGATATGGAGATCTTGTCCCGAATAGTCCTTCCACGAAACTACTCGCTTGCGCTTTCGTTTTCACCGGAATGGCCTTAGTTGGCCTAATACTAAGCAGTGCAGCTGATTATTTGGTAGATAAGCAAGAAATCTTGATATTTAAGGCCTTGCATACCAACCAAAATGGCCAGTGTGACAACACAAATGAATTGGATACTAATAAAGCTAGAAACAAGTGTGTAGTGGTGTTTCTCCTTCTTCTTTTGTTCATCAGTTCTGGGACTGTCTTTTTAATCACCTTTGAGAAGTTGGATTTCATTGATGCCTTTTACTGTGTATGTTCGACCATCACTACGCTTGGCTATGGAGATAAAAGCTTCTCGACTAAGTGGGGACGGATCTTCGCCATTTTCTGGATCTTGATAAGTACCATTACTCTTGCTCAGTTTTTCCTTTACATTGCTGAGCTAAACACTGAAAGAAGGCAGAAATCTTTGGTAGAGTGGGTTCTAAGTAAAAAGGTGACAAACTTAGACCTCGAGGTTGCTGATATTGATGATGACGGGGTTGTCGGGGCTGCAGAATTTATCATACACAAGCTCAAAGAGATGGGGAAAATTACTGAAGAAGACATTTCACCTGTGATGAAGGAATTTGAGAATCTTGATGTTGATCAGTCAGGAACTCTGTCCACATCTGATATTACACTTGCTCAAATGTCTTAA 1062 40.77 MASKEARQPLLPTRSNNIETQIIDIPRSRRRLRRTKSAPHADSPYTDITGTNTATCPVPRSGLFFGNLRPSFRRVALVLIMYLGIGTLCFYLVRNQVRGEKTNGIVDAIYFTVVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSSAADYLVDKQEILIFKALHTNQNGQCDNTNELDTNKARNKCVVVFLLLLLFISSGTVFLITFEKLDFIDAFYCVCSTITTLGYGDKSFSTKWGRIFAIFWILISTITLAQFFLYIAELNTERRQKSLVEWVLSKKVTNLDLEVADIDDDGVVGAAEFIIHKLKEMGKITEEDISPVMKEFENLDVDQSGTLSTSDITLAQMS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42532299 42541163 + Sed0019808.1 Sed07g2744 721608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2744 353 SUPERFAMILY EF-hand 282 348 IPR011992 -
Sed07g2744 353 FunFam Calcium-activated outward-rectifying potassium channel 1 69 164 - -
Sed07g2744 353 Pfam Ion channel 198 271 IPR013099 -
Sed07g2744 353 Pfam Ion channel 78 158 IPR013099 -
Sed07g2744 353 SUPERFAMILY Voltage-gated potassium channels 185 287 - -
Sed07g2744 353 Gene3D - 69 163 - -
Sed07g2744 353 Gene3D - 177 281 - -
Sed07g2744 353 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Sed07g2744 353 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 75 298 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Sed07g2744 353 SUPERFAMILY Voltage-gated potassium channels 68 164 - -
Sed07g2744 353 MobiDBLite consensus disorder prediction 29 51 - -
Sed07g2744 353 PRINTS Two pore domain K+ channel signature 114 142 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed07g2744 353 PRINTS Two pore domain K+ channel signature 230 239 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1398 Sed-Chr1:10376157 Sed07g2744 Sed-Chr7:42532299 2.90E-91 dispersed
Sed07g2744 Sed-Chr7:42532299 Sed14g1556 Sed-Chr14:23749213 8.90E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2744 K05389 - csv:101216032 566.614