Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2751 ATGATTCATTCTGGTTTCTTCCTTGTGGGTCCTTCATTTAGTCCTGATGCTACTACGCCTTTCATATTAACTCCGCTGTCTAGAGAAGATGGCGCTTCAGCGGACGATATCCGGAATGATTCGTCGGGTTCCCTTCCTCCTTCTTTTTGGGTTAGAATGGCGATGAGAGTCTCTAGAGCCAGATGGTTCATTTTCTTGAGAAGAGTTTTTCACTACCAGAATGGATCGAGATCTGATCTTGGGATGAATCCTTTCAATTCGGGTTCGTGGATGGTGATGGAACTTGTAGCTTTGTTGTTTCAGTTAATCATCTCAGTTTTTACTCTTGCTATCTCACAGACTGAGAGGCCAATTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTTTTCTTTGCTTATTGCTTCTTTACTGCCGCCATCGGTTTCATCATCAAATTCTGGAAGATGGTAATAGTCTTTCGGACATCGAACAGCAGAGGAACGATGGATCAATGAGGTACTCACATTTGATAAACAGATGTCGAACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGTCTTCGATTCTCGATTTGCCTCGTTCCAAAGTGCTCCAAAACTTCATCTACTATGCAGCTTCCTGCTAGTTTTGAATGCCATTTGGTACTCTTTTCCATTCATTCTGTTTCTGCTGCTTTGTTGCTGTGTGCCATTGGTTAGTAGCCTTATAGGATATAACATTAACATGGGATCAACTGAAAGAGGAGCGTCGGATGATCAAATTTCTCAACTTCCTTGCTGGAAATACAAAGCCGTCGACGTCAACATCAATCTCGAAATTCAACCTGATAATAGCAATACAGGACGACTTCCAAAAGAGGATCCAGAATGTTGTATCTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAATTACCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAATGGCTTGCTATTTCATCTTCATGCCCTCTTTGTAAGCAACAACTTCAAAGATAG 1041 41.59 MIHSGFFLVGPSFSPDATTPFILTPLSREDGASADDIRNDSSGSLPPSFWVRMAMRVSRARWFIFLRRVFHYQNGSRSDLGMNPFNSGSWMVMELVALLFQLIISVFTLAISQTERPIWPMRLWIGGYDLGCFLCLLLLYCRHRFHHQILEDGNSLSDIEQQRNDGSMRYSHLINRCRTSLDLFFAIWFVMGNLWVFDSRFASFQSAPKLHLLCSFLLVLNAIWYSFPFILFLLLCCCVPLVSSLIGYNINMGSTERGASDDQISQLPCWKYKAVDVNINLEIQPDNSNTGRLPKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAISSSCPLCKQQLQR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42582017 42585162 - Sed0004744.1 Sed07g2751 721615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2751 346 CDD RING-H2_EL5-like 299 340 - -
Sed07g2751 346 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 42 345 - -
Sed07g2751 346 SMART ring_2 300 340 IPR001841 -
Sed07g2751 346 SUPERFAMILY RING/U-box 299 344 - -
Sed07g2751 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 345 IPR013083 -
Sed07g2751 346 Pfam Ring finger domain 299 341 IPR001841 -
Sed07g2751 346 ProSiteProfiles Zinc finger RING-type profile. 300 341 IPR001841 -
Sed07g2751 346 SMART ringv_2 299 341 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1568 Sed-Chr3:9906589 Sed07g2751 Sed-Chr7:42582017 1.60E-48 dispersed
Sed03g1569 Sed-Chr3:9906589 Sed07g2751 Sed-Chr7:42582017 1.60E-48 dispersed
Sed04g3632 Sed-Chr4:45484567 Sed07g2751 Sed-Chr7:42582017 1.80E-159 dispersed
Sed07g2751 Sed-Chr7:42582017 Sed12g0197 Sed-Chr12:1104885 1.20E-25 dispersed
Sed07g2751 Sed-Chr7:42582017 Sed07g2752 Sed-Chr7:42582017 1.20E-177 tandem
Sed04g3629 Sed-Chr4:45478527 Sed07g2751 Sed-Chr7:42582017 1.10E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2751 - - - 0.0