Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2764 ATGGCTGCAATTCTAAGCAATTCTTTTCTTATTCCTCTCACCATTGCTTTGGTTTTATCTGTAAACACCCTTCTCTTTTCTTCCTGTTACTCCATTAATGAACATGGTAGAGCTCTTCTTGAATGGAAACGTAATCTAACAAGCCAAATCAACGTTTTGGGTTCGTGGAATCCCGGTACCCAAACGCCATGCTCATGGTTTGGAGTTTTCTGCGACGGGAGCGGAGAGGTGGTGGGGATATCCCTGGATCAAGTGCCTTTGGAAGGTACATTGCCTACAAATTTTCAGGCTTTCAAGTTCTTGAGGACCATTATAATCTCCGGGACGAATATTACTGGACTGATCCCAAAAGAGTTTGGAGATTATACTGCGTTGAGAGTTCTTGATCTTAGCAACAATGACCTCTCAGGGAATGTCCCAGAAGAGATTTGCAGGCTGAGCAAGTTGGAGGAATTGTCTCTTAATACCAATGGTTTTGAAGGGCCCATACCTTTGGAGATTGGAAATCTTACAAACCTTATGTATCTCCGCCTCTATGACAATAATTTCAATGGGGGCATTCCAAAGAGCATTGGAATGTTGAAGAATCTTTATCATCTACAAGTTGGAGGGAATATAAATCTCAAGGATCCCTTGCCAATGGAGATTGGAAACTGCAGCAGTTTAGCCATGTTAGGCTTAGCCGATATCGGAGTCACCGGCAGTCTTCCTTCAACGATTGGGATGCTGAAAAAAATCCAAAGCATAGCAATATATAATACACCACTTACAGGTCCAATCCCAGAAGAGATTGGAAACTGCAGTGACTTGCAGTTTCTTCTCCTATATAACAATTCACATTATGGGTCGCTACCGAGAGGACTCGGGAGGCTGCAAAATCTTCAACGACTTTTTCTATGGCATAACAACTTGAAAGGTGACATTCCAGAAGAAATTGGAAACTGCGAGCAACTTGTCGTCTTGGACATTTCAATGAATGAAATAACTGGAAGCATACCAAAAAGTCTAGGAAGGCTTTCATATCTTCAAGATATTCAACTGAGTAATAATCGACTTTCTGGGGTAATACCTAGTGAAATCTCTAATTGTTTGTCTTTGATTCACATGGAAATCGACAACAACAATCTCACTGGCGAGATACCGGCTAATATTGGCAACTTGAAGGACTTGAAATTATTTTTTGCCTGGCAGAACCAACTTAGAGGAAGTATTCCCAGCAGTTTCTCAGGTTGCTACAGTCTCGAGTCTATTGATATCTCTTATAATTACTTGTCAGGTATCATACCGAAAGAGATTTTCGAGTTAAAAAATCTCACAAAACTTATTCTGATGTCAAACAAGCTGTCTGGGATCATTCCACCTGAAATAGGAAATGCTACAACGCTAGTTAGGTTAAGACTGGCTGATAATAGGATTGGAGGTACCATTCCATCAGAGATAGGAAATCTGAAGAACTTAATTTTCTTGGATGTAGGCGAAAACCTTCTTGTTGGTGGAATTCCTCCATCGTTATCGAAATGTGAAAATCTTCAGTTCTTCGACCTCCATTCGAATGGGCTCACTAGTCTTCCAAATTATCTACCAAAGGGCCTACTACTTTTTGATGTATCCAACAACATGCTTAAAGGCCAAATCAATCCCAACATTGGAAAATTGATGGAACTAACAAAACTAGTTCTTAGAAACAACCAACTTTCAGGGAAAATCCCTGAAGAAATTGTTTCCTGCAAGAATCTACAACTTTTAGACATTGGCAGCAATTTCTTCACTGGGGAACTTCCAAAGGAATTGGGTCTAATTGATACACTAGAAATTGCTCTGAATCTAAGTTGCAATCAATTTTCAGGTGAAATCCCATACGAATTCTCTAGACTAACCAAGCTAGGAATTCTAGACCTATCCCACAACAACCTCTCTGGCACCCTTAGATATCTTGCAGAGCTCGAAAACCTCGTGTCACTAAACATCTCAAACAACAACTTCTCGGGAAAATTGCCCGACACACCGTTCTTTCGAAAGCTCTCTCTGAAGGAAATCCACGGAAACAAAGGCCTCTACATGACACACGGGCTAGTAACTCCTAACGACAACAACGTGGTATCCCGAAACACAAAAAGCAGAGAAACAATAGCGATAGGCATTCCAATCTTGATAAGCTTAAGTGCAGTGTTGTTCTCTCTAGCAATCTTAATGCTAATCTGCACCCAAAAGGCCAATCCCATTCTCCCCACAGAAGAAGAAAAATGGGACGTAACCATGTTTCAAAAGCTCGATTTTGCAATCGACGACGTCCTTCGAAACTTAACAGCGTGGAACGTAGTCGGCACGGGAAGCTCAGGAGTGGTATACAGAGTTCAAACATCAAAAGAGGAAACAATGGCAGTAAAGAAAATGTTATCTACAGAAGAAACAGAAGCATTTGGTGCAGAAATCCAAATTTTGGGATCAATCAGACACAAGAACATAATCAGGCTACTGGGTTGGGGGACAAACAAGAAATCAAAGCTTTTATTCTATGATTACCTTCCAAATGGGAATTTGAACTCTCTTATCCATGGGCCTGGAAAGAAACCAGAATGGGAGACCAGATATGAAATTGTTCTTGGAGTGGCTCATGCGCTTGCATATCTCCACCATGATTGCGCTCCGCCAATCTCACATGGCGATGTCAAAACCCTAAATGTGCTGCTCGGCCGTGACCTTAAGCCGTACCTCGCAGACTTTGGGCTAGCTAGAATAGTGAGTAAAAGCCACGACAATGAAGATTTAGGGAAGCCATTGTCGAGTCCTAAACTTGCTGGTTCTTTCGGCTACATGGCCCCGGAACAAGGATCAATGATTCATGGAACAGAGAAGAGCGACGTGTATAGCTTCGGAGTCGTAATTTTAGAAATTCTAACGGGGCGGCACCCATTGGACCCAACTTTACCTGGAGAAGGCAATTTGGTGCAATGGGTTAAGGACCAATTAGCCACAAAGCAAACCGCATTTGACATTTTTGATTCCAACCGCAAAGGAAATATCGATCCCATAAACAACGAAATGCTTCAAGTTCTGGCCGTTGGATTGATCTGCGTCAACTGCAAGCCTGATGATCGACCCCAAATGAAAGATGTCGTCACCATGCTCGAAGTCATCGGAAAATCAGAATAG 3153 41.93 MAAILSNSFLIPLTIALVLSVNTLLFSSCYSINEHGRALLEWKRNLTSQINVLGSWNPGTQTPCSWFGVFCDGSGEVVGISLDQVPLEGTLPTNFQAFKFLRTIIISGTNITGLIPKEFGDYTALRVLDLSNNDLSGNVPEEICRLSKLEELSLNTNGFEGPIPLEIGNLTNLMYLRLYDNNFNGGIPKSIGMLKNLYHLQVGGNINLKDPLPMEIGNCSSLAMLGLADIGVTGSLPSTIGMLKKIQSIAIYNTPLTGPIPEEIGNCSDLQFLLLYNNSHYGSLPRGLGRLQNLQRLFLWHNNLKGDIPEEIGNCEQLVVLDISMNEITGSIPKSLGRLSYLQDIQLSNNRLSGVIPSEISNCLSLIHMEIDNNNLTGEIPANIGNLKDLKLFFAWQNQLRGSIPSSFSGCYSLESIDISYNYLSGIIPKEIFELKNLTKLILMSNKLSGIIPPEIGNATTLVRLRLADNRIGGTIPSEIGNLKNLIFLDVGENLLVGGIPPSLSKCENLQFFDLHSNGLTSLPNYLPKGLLLFDVSNNMLKGQINPNIGKLMELTKLVLRNNQLSGKIPEEIVSCKNLQLLDIGSNFFTGELPKELGLIDTLEIALNLSCNQFSGEIPYEFSRLTKLGILDLSHNNLSGTLRYLAELENLVSLNISNNNFSGKLPDTPFFRKLSLKEIHGNKGLYMTHGLVTPNDNNVVSRNTKSRETIAIGIPILISLSAVLFSLAILMLICTQKANPILPTEEEKWDVTMFQKLDFAIDDVLRNLTAWNVVGTGSSGVVYRVQTSKEETMAVKKMLSTEETEAFGAEIQILGSIRHKNIIRLLGWGTNKKSKLLFYDYLPNGNLNSLIHGPGKKPEWETRYEIVLGVAHALAYLHHDCAPPISHGDVKTLNVLLGRDLKPYLADFGLARIVSKSHDNEDLGKPLSSPKLAGSFGYMAPEQGSMIHGTEKSDVYSFGVVILEILTGRHPLDPTLPGEGNLVQWVKDQLATKQTAFDIFDSNRKGNIDPINNEMLQVLAVGLICVNCKPDDRPQMKDVVTMLEVIGKSE 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42677235 42681371 + Sed0027662.1 Sed07g2764 721628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2764 1050 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Sed07g2764 1050 ProSiteProfiles Leucine-rich repeat profile. 509 530 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 ProSiteProfiles Protein kinase domain profile. 768 1046 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2764 1050 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524(InterPro)
Sed07g2764 1050 SUPERFAMILY Protein kinase-like (PK-like) 762 1046 IPR011009 -
Sed07g2764 1050 Pfam Protein kinase domain 772 1040 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2764 1050 SUPERFAMILY RNI-like 303 667 - -
Sed07g2764 1050 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2764 1050 Gene3D Transferase(Phosphotransferase) domain 1 842 1050 - -
Sed07g2764 1050 FunFam Nuclear pore complex protein NUP107 32 189 - -
Sed07g2764 1050 FunFam Leucine-rich repeat receptor-like protein kinase 842 1050 - -
Sed07g2764 1050 Gene3D Ribonuclease Inhibitor 34 142 IPR032675 -
Sed07g2764 1050 Gene3D Ribonuclease Inhibitor 530 604 IPR032675 -
Sed07g2764 1050 Gene3D Phosphorylase Kinase; domain 1 739 841 - -
Sed07g2764 1050 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 422 1044 IPR051716 -
Sed07g2764 1050 Gene3D Ribonuclease Inhibitor 331 427 IPR032675 -
Sed07g2764 1050 Gene3D Ribonuclease Inhibitor 605 690 IPR032675 -
Sed07g2764 1050 Gene3D Ribonuclease Inhibitor 230 330 IPR032675 -
Sed07g2764 1050 Gene3D Ribonuclease Inhibitor 428 529 IPR032675 -
Sed07g2764 1050 Gene3D Ribonuclease Inhibitor 143 229 IPR032675 -
Sed07g2764 1050 SMART serkin_6 768 1046 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2764 1050 Pfam Leucine Rich Repeat 607 625 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 Pfam Leucine Rich Repeat 650 668 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 Pfam Leucine Rich Repeat 555 575 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 Pfam Leucine Rich Repeat 462 483 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 Pfam Leucine Rich Repeat 365 387 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 SUPERFAMILY RNI-like 80 401 - -
Sed07g2764 1050 PRINTS Leucine-rich repeat signature 125 138 - -
Sed07g2764 1050 PRINTS Leucine-rich repeat signature 625 638 - -
Sed07g2764 1050 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 206 429 - -
Sed07g2764 1050 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 Pfam Leucine rich repeat 397 448 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 Pfam Leucine rich repeat 101 158 IPR001611 GO:0005515(InterPro)
Sed07g2764 1050 SMART LRR_typ_2 435 459 IPR003591 -
Sed07g2764 1050 SMART LRR_typ_2 291 315 IPR003591 -
Sed07g2764 1050 SMART LRR_typ_2 508 530 IPR003591 -
Sed07g2764 1050 SMART LRR_typ_2 552 576 IPR003591 -
Sed07g2764 1050 SMART LRR_typ_2 170 194 IPR003591 -
Sed07g2764 1050 SMART LRR_typ_2 122 146 IPR003591 -
Sed07g2764 1050 SMART LRR_typ_2 339 363 IPR003591 -
Sed07g2764 1050 SMART LRR_typ_2 625 648 IPR003591 -
Sed07g2764 1050 SMART LRR_typ_2 483 507 IPR003591 -
Sed07g2764 1050 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 435 696 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2764 Sed-Chr7:42677235 Sed08g0096 Sed-Chr8:577454 1.60E-89 dispersed
Sed07g2764 Sed-Chr7:42677235 Sed07g2765 Sed-Chr7:42685689 3.10E-221 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79569 PF00069 Pkinase 5.20E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2764 - - - 0.0