Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2765 ATGGCTGCAATTCCAAGCAATTATTTTCTAATTCCTCCTCATTTCTTAACCATAGCATTGGTTTTATCTGTAAACACCTTTCTCTTTTCTTCATGTTACTCCATTAATGAACAGGGTAGAGCTCTTCTCCAATGGAAGCGTAATCTAACAAGCCCTACCGTCGTTTTACGTTCATGGAATCCAATTTCTCGAACGCCGTGTTCATGGTTTGGAGTTTTCTGCAACGAGTACGGAGAGGTGATGGAGATATCCCTGGATCAAGTGCATTTGCAAGGTACATTGCCTACAAATTTTCAAGCTTTCAAGTTCTTGAAGACCATGATAATCTCTGGGACGAATATAACCGGACCGATACCAAAAGAGTTTGGAGATTATACCGAGTTGAGTGTTCTTGATCTTAGCAACAATAACCTCTCAGGGAATGTCCCAGAAGAGATTTGCAAGCTGAGCAAGTTGGAGGAATTGTCTCTTAATACCAATGGTTTTGAAGGGCCCATACCTTTGGAGATTGGAAATCTTACAAACCTTATGTATCTCCGCCTCTATGACAATAATTTCAATGGGGGCATTCCAAAGAGCATTGGAATGTTGAAGAATCTTTATCTTCTAAAAGTCGGAGGGAATCTAAATCTCAAGGATCCCTTGCCAATGGAGATTGGAAACTGCAGCAATTTAGCCTTGTTAGGCTTAGCCGATGTCGGAGTCACCGGCAGTCTTCCTTTGTCGATTGGGATGCTTAAAAAAATCCAAAGCATAGCAATATATAATACACCACTTACAGGTCCAATCCCAGAAGAAATTGGAAATTGCAGTGAGTTGCAGTTGCTTCTCCTGTATAACAATACACATCAGGGGTCAATACCGAAAGAAATCGGGAGGCTACAAAATCTTCAACGACTTATTCTTTGGCATAACAACTTGGAAGGTGACATTCCAGAAGAACTTGGAAACTGCCAGCAACTTGTAGATCTGGACCTTTCAGTGAATGCAATAACTGGAAGCATACCAAAAAGTCTTGGAAGGCTTTCGTATCTTCAAGAGATGCAACTGAGTAGTAATCGACTTTCTGGTGTAATACCTGGTGAAATCTTTAATTGTTTGTCTTTGATTCACATGGAAATCGACAACAACAATCTCACGGGCGAGATACCAGCTAGTATTGGCAACTTAAAGAACTTGAATTTATTTTTTGCCTGGCAGAACCAACTTACAGGAAGTATTCCCAGCAGTTTCTCAAGCTGCTCTAGTCTCGAGTCTATTGATCTTTGTTATAATTATTTGTCTGGTCCAATACCTAAAGAGATTTTCGAGTTGAGAAATCTCACCAAACTTATTCTAATGTCAAACAAGCTGTCCGGGATCATTCCACCCGAAATAGGAAATGCAACGACACTAATCAGGTTAAGATTGGCTGATAATAGGATTGGAGGTACTATTCCATCAGAGATAGGAAACTTGAAGAACTTGAATTTTTTCGATGCAGGCGAAAACTTTTTTGTTGGAGGGATTCCTCCATCAATATTGAAATGTGAAAATCTTCAATTTTTCGACCTCCATTCGAATGGGCTCACTAGTCTTCCAAATGATCTACCAAAGGGCCTACAATATTTTGATGTATCCAACAACAGGCTTAAAGGCCAAATCAATCCCAACATTGGAGGATTGGTGGAACTAACAAAACTAGTCCTCAGAAACAACCAACTAGCAGGGAAAATCCCTGAAGAAATTGTTTCCTGCAATAAGCTACAAGTTCTAGACATTGGCAGCAACTTCTTCACAGGGGAACTTCCGAAAGAATTGGGTCTAATTGGCTCACTTGAAATTGCTCTTAATCTAAGTTGCAATCAATTTTCAGGCGAAATCCCATATGAATTCTCAAGTCTAACCAAGCTAGGAATTCTAGACCTATCCCACAACAACCTCTCTGGAAACCTTAGATATCTTGCAAATCTCGAAAACCTCATGTCGCTAAACGTCTCATACAACAACTTCTCGGGAAATTTGCCCGACACGACGTTCTTTCGAAAGCTCTCCCTAAAGGAAATCTACGGAAACAAAGGCCTCTACGATGCAAAGGGGCTAGTAACTCCCAACGACAACAAGGTGGTATCCATACACAACAAAAGCAGAGAAACAATAGAGATAAGCATTCCAATCTTGATAAGCATAAGTGCAGTGTTGTCCTTTCTAGCAATCCTAATCCTAATCCGCAAACATATGGCCAATTCCATTCTCCTCACAGAAGGAGAGAAATGGGACATAACCATGTTTCAAAAGCTCGATTTCGCAATCGACGACATCCATCAAAACTTAACCCCGTCGAATGCAATCGGCACGGGAAGCTCGGGAGTCGTATACAGAGTGCAAACATCAAAAGAGAAAACAATGGCGGTAAAGAAAATCTGGTGTATAGAAGAAACAGAAGCATTTGGTGCAGAAATCCAAATTTTGGGATCAATCAGACACAAGAACATAATCAGGCTACTGGGTTGGGGGGCAAACAAGAAATCAAAGCTTTTATTCTATGATTACCTTCCAAATGGGAATTTGAACTCTCTGATCCATGGGCCTGGAAAGAAACCAGAATGGGAGACCAGATATGAAATTGTTCTTGGAGTGGCTCAAGCTCTTACATATCTCCACCATGATTGCGCTCCGCCAATCTCACATGGCGATGTCAAAACCCTAAATGTGCTGCTCGGCCATGACCTTGAGCCATACCTTGCGGACTTTGGGCTAGCCAGAATCGTGAGTAGAAACAACGACAATGAGGGTTTAGTGAAGCCATTGTCGAGCCCTCAGCTTGCTGGTTCTTTCGGCTACATGGCACCTGAACAAGGATCAATGATTGGAGCTACGGAGAAGAGTGACGTGTATAGCTTCGGAGTAGTAATCCTAGAAATTCTAACGGGGCGACACCCGTTGGACCCAACTTTACCAGGAGGAGGCAATTTGGTGCAATGGGTTCAAGGCCAATTGGCCACAAAGCAATCCCCATTTGACATTTTTTATTCCAACCTTAGAGGAAGAACAGATCCCACAATCCACGAAATGCTTCAAGTTCTAGCAGTTGCATTGATCTGCGTCAGCTTCAAGCCTGATGATCGACCCCAAATGAAAGATGTCGTCTCCATGCTCGAAGTAATCGTAAAATCGGAATCGGAAAAAGACGTCGCTGCCGCCAAAGGCCCCAAGCCGGAATTCGCGGTGGTGGTTCAATTGTCATCACTACAAAAGAAGGTTTTGTCCCAAGGATCTTCCAAGTATTCGTTGTCTTATTTGATGCTTCAATATGATGTTCTAAAATAA 3309 41.92 MAAIPSNYFLIPPHFLTIALVLSVNTFLFSSCYSINEQGRALLQWKRNLTSPTVVLRSWNPISRTPCSWFGVFCNEYGEVMEISLDQVHLQGTLPTNFQAFKFLKTMIISGTNITGPIPKEFGDYTELSVLDLSNNNLSGNVPEEICKLSKLEELSLNTNGFEGPIPLEIGNLTNLMYLRLYDNNFNGGIPKSIGMLKNLYLLKVGGNLNLKDPLPMEIGNCSNLALLGLADVGVTGSLPLSIGMLKKIQSIAIYNTPLTGPIPEEIGNCSELQLLLLYNNTHQGSIPKEIGRLQNLQRLILWHNNLEGDIPEELGNCQQLVDLDLSVNAITGSIPKSLGRLSYLQEMQLSSNRLSGVIPGEIFNCLSLIHMEIDNNNLTGEIPASIGNLKNLNLFFAWQNQLTGSIPSSFSSCSSLESIDLCYNYLSGPIPKEIFELRNLTKLILMSNKLSGIIPPEIGNATTLIRLRLADNRIGGTIPSEIGNLKNLNFFDAGENFFVGGIPPSILKCENLQFFDLHSNGLTSLPNDLPKGLQYFDVSNNRLKGQINPNIGGLVELTKLVLRNNQLAGKIPEEIVSCNKLQVLDIGSNFFTGELPKELGLIGSLEIALNLSCNQFSGEIPYEFSSLTKLGILDLSHNNLSGNLRYLANLENLMSLNVSYNNFSGNLPDTTFFRKLSLKEIYGNKGLYDAKGLVTPNDNKVVSIHNKSRETIEISIPILISISAVLSFLAILILIRKHMANSILLTEGEKWDITMFQKLDFAIDDIHQNLTPSNAIGTGSSGVVYRVQTSKEKTMAVKKIWCIEETEAFGAEIQILGSIRHKNIIRLLGWGANKKSKLLFYDYLPNGNLNSLIHGPGKKPEWETRYEIVLGVAQALTYLHHDCAPPISHGDVKTLNVLLGHDLEPYLADFGLARIVSRNNDNEGLVKPLSSPQLAGSFGYMAPEQGSMIGATEKSDVYSFGVVILEILTGRHPLDPTLPGGGNLVQWVQGQLATKQSPFDIFYSNLRGRTDPTIHEMLQVLAVALICVSFKPDDRPQMKDVVSMLEVIVKSESEKDVAAAKGPKPEFAVVVQLSSLQKKVLSQGSSKYSLSYLMLQYDVLK 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42685689 42689899 + Sed0009667.1 Sed07g2765 721629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2765 1102 Gene3D Transferase(Phosphotransferase) domain 1 845 1066 - -
Sed07g2765 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 209 432 - -
Sed07g2765 1102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 888 900 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2765 1102 ProSiteProfiles Protein kinase domain profile. 771 1049 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2765 1102 Pfam Leucine Rich Repeat 175 196 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 Pfam Leucine Rich Repeat 558 578 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 Pfam Leucine Rich Repeat 151 173 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 Pfam Leucine Rich Repeat 653 670 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 Pfam Leucine Rich Repeat 128 149 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 Pfam Leucine Rich Repeat 465 486 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 Pfam Leucine Rich Repeat 610 628 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 Pfam Leucine Rich Repeat 534 555 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 SMART serkin_6 771 1049 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2765 1102 ProSitePatterns Protein kinases ATP-binding region signature. 777 800 IPR017441 GO:0005524(InterPro)
Sed07g2765 1102 Gene3D Ribonuclease Inhibitor 291 370 IPR032675 -
Sed07g2765 1102 FunFam Nuclear pore complex protein NUP107 35 188 - -
Sed07g2765 1102 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 Pfam Protein kinase domain 775 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2765 1102 SUPERFAMILY Protein kinase-like (PK-like) 765 1048 IPR011009 -
Sed07g2765 1102 Gene3D Ribonuclease Inhibitor 191 290 IPR032675 -
Sed07g2765 1102 FunFam Leucine-rich repeat receptor-like protein kinase 845 1062 - -
Sed07g2765 1102 Gene3D Phosphorylase Kinase; domain 1 737 844 - -
Sed07g2765 1102 PRINTS Leucine-rich repeat signature 128 141 - -
Sed07g2765 1102 PRINTS Leucine-rich repeat signature 628 641 - -
Sed07g2765 1102 SUPERFAMILY L domain-like 311 692 - -
Sed07g2765 1102 Gene3D Ribonuclease Inhibitor 609 693 IPR032675 -
Sed07g2765 1102 Gene3D Ribonuclease Inhibitor 35 190 IPR032675 -
Sed07g2765 1102 SUPERFAMILY RNI-like 82 425 - -
Sed07g2765 1102 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 526 700 - -
Sed07g2765 1102 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 Pfam Leucine rich repeat 390 451 IPR001611 GO:0005515(InterPro)
Sed07g2765 1102 SMART LRR_typ_2 651 675 IPR003591 -
Sed07g2765 1102 SMART LRR_typ_2 342 366 IPR003591 -
Sed07g2765 1102 SMART LRR_typ_2 438 462 IPR003591 -
Sed07g2765 1102 SMART LRR_typ_2 628 650 IPR003591 -
Sed07g2765 1102 SMART LRR_typ_2 294 318 IPR003591 -
Sed07g2765 1102 SMART LRR_typ_2 173 197 IPR003591 -
Sed07g2765 1102 SMART LRR_typ_2 555 579 IPR003591 -
Sed07g2765 1102 SMART LRR_typ_2 125 149 IPR003591 -
Sed07g2765 1102 SMART LRR_typ_2 510 533 IPR003591 -
Sed07g2765 1102 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Sed07g2765 1102 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 433 525 - -
Sed07g2765 1102 Gene3D Ribonuclease Inhibitor 371 608 IPR032675 -
Sed07g2765 1102 PANTHER RECEPTOR-LIKE PROTEIN 55 377 1047 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2765 Sed-Chr7:42685689 Sed12g2458 Sed-Chr12:34202758 1.20E-90 dispersed
Sed07g2764 Sed-Chr7:42677235 Sed07g2765 Sed-Chr7:42685689 3.10E-221 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79570 PF00069 Pkinase 2.90E-37 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2765 - - - 0.0