Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2855 ATGTGTGATCTACTTCGAATCAACACGGATCGTGGAGTAATGATCAATGATGGGAAGGCTAGATTCTCCATTAAAGGACAGCCCATTCATCACTTTGTTGGTACCTCCACTTTTAGTGAATACACTGTTGTTCATGTTGGCTGTTTGGCTAAGATCAACCCTGCTGCTCCTCTTGACAAAGTCTGTGTTCTTAGCTGTGGCATTTCCACAGGGCTTGGTGCTAGTTTGAATGTTGCAAAGCCTAAAAAGGGTTCATCTGTTGCTATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGAGCAAGAATTTCTGGTGCATCTAGGATCATTGGTGTTGATCTTAACCCAGCTAGATTTGAAGGAGCTAAGAAATTCGGCTGCACCGAGTTTGTGAATCCAAAAGATCACAGCAAGCCAGTTCAAGAGGTGATTGCGGAGATGACGAATGGAGGAGTCGACCGAAGTGTCGAATGCACCGGAAGCGTCCAAGCAATGATGTCGGCGTTCGAATGCGTCCACGATGGATGGGGTGTTGCTGTACTTGTGGGAGTACCAAACAAAGACGATGCATTCAAGACTCACCCCATGAATCTGCTGAACGAGAGGACTCTAAAGGGTACGTTCTTCGGAAACTACAAGCCTCGATCCGACATTCCTGGGGTCGTTGAGAAGTACTTGAACAAGGAGCTGGAACTGGAAAAGTTTATTACACATTCAGTGCCATTTTCTGAGATCAACAAGGCATTTGATTACATGCTGAAAGGGGAGTCGATTCGATGCATTATTCGGATGGGAGAGTGA 807 46.22 MCDLLRINTDRGVMINDGKARFSIKGQPIHHFVGTSTFSEYTVVHVGCLAKINPAAPLDKVCVLSCGISTGLGASLNVAKPKKGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLNPARFEGAKKFGCTEFVNPKDHSKPVQEVIAEMTNGGVDRSVECTGSVQAMMSAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDIPGVVEKYLNKELELEKFITHSVPFSEINKAFDYMLKGESIRCIIRMGE 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43311526 43314947 - Sed0021475.4 Sed07g2855 721719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2855 268 SUPERFAMILY GroES-like 216 265 IPR011032 -
Sed07g2855 268 Pfam Zinc-binding dehydrogenase 94 225 IPR013149 -
Sed07g2855 268 Gene3D - 1 266 - -
Sed07g2855 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 57 230 IPR036291 -
Sed07g2855 268 PANTHER ALCOHOL DEHYDROGENASE 1 264 - GO:0004024(PANTHER)|GO:0005829(PANTHER)|GO:0008270(PANTHER)|GO:0046294(PANTHER)|GO:0051903(PANTHER)
Sed07g2855 268 SUPERFAMILY GroES-like 2 74 IPR011032 -
Sed07g2855 268 FunFam Alcohol dehydrogenase class-P 71 209 - -
Sed07g2855 268 Gene3D - 74 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2855 K18857 - - csv:101209854 504.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2853 Sed-Chr7:43311526 Sed07g2855 Sed-Chr7:43311526 1.60E-153 dispersed
Sed07g2855 Sed-Chr7:43311526 Sed10g1584 Sed-Chr10:32396489 4.70E-142 dispersed
Sed07g2854 Sed-Chr7:43311526 Sed07g2855 Sed-Chr7:43311526 1.60E-153 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1208 . . . . . . . . . . . . Car01g00888 . . . . . . . . . . . . . . . . . . . . Cone17ag0800 Cone20ag0404 . . . . Blo17g00721 Blo18g00224 Bda08g01180 Bda13g01537 Bpe02g01599 Bpe14g00328 . Bma05g00197 Sed07g2855 Cmo01g01036 . . . . . . Cpe02g00894 Bhi09g01486 Tan01g3358 Cmetu01g1438 . Hepe03g1217 Mch11g1415 . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . Chy03g00638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89